LOC111195783


Basic Information

Item Value
gene id LOC111195783
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 34170756 ~ 34188629 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651807.1
atatggattggGACAACTCCTCTGTGACTGATGAAGTCCTCCAGGTGAGCGGTTGtctccggttgagagtatgctgtgcgcgattggctgctgcttctcactggtgtgtgttggctgtGAAGAGCAAACAGAGGTTTAACATTCATGGCCAGTCGATACGAGTCCTCTTGAGGGGTCAGTGGGTCCACTGCACAGGGAAACAGAAGGAACTGGTCAGTGTGGAGGAGTCTTAGAGAAGAATGGAACAGAATGAAACAGAAGTCacgtctgtgTCCTGGAATCCCCCCTTTTGAACAGATGACCAGTTTTCCCTTTAGAATTGATTTCGTAGATGATTttgctcttttctctttttggcTTTCTGATCATTACTAGTTGATTGTCTTCCCAGGAACATGCTGGGCCATaacacaatgtttattactgtggcAAATACTGgtatttgtgacccttattgtattAGTGGAACATGACCAGAGTTTAGAACCTAATATAATAAACAGTCTTTAATCTAAGTACCTACCTAACTAAGTTTCTACTACATATTGATAAAATTTAATCATTCTTCAGTTCCTAATAGTTTTTCACGCTAATATTGGCAGAAAAAACATCTTATTGTGTTATATAATTAGAGCGAGTGGGAGGCACTAGTGTTTGGCTGGAAGCGATCTGTAGCTTCACTGTAGGGCTTTTCCAGAAATCACAGCCAATACAAGCAGATAGTAACAAATACACTCTTATACACTCTTTATTGATTTATGGATCACTGAAAGAATGTTGCTTTGCCCTCAGTATATTGTGTTCTTTCTGattaaacaaataatcaatattta
>XR_002651808.1
atatggattggGACAACTCCTCTGTGACTGATGAAGTCCTCCAGGTGAGCGGTTGtctccggttgagagtatgctgtgcgcgattggctgctgcttctcactggtgtgtgttggctgtGAAGAGCAAACAGAGGTTTAACATTCATGGCCAGTCGATACGAGTCCTCTTGAGGGGTCAGTGGGTCCACTGCACAGGGAAACAGAAGGAACTGGTCAGTGTGGAGGAGTCTTAGAGAAGAATGGAACAGAATGAAACAGAAGTCacgtgTCCTGGAATCCCCCCTTTTGAACAGATGACCAGTTTTCCCTTTAGAATTGATTTCGTAGATGATTttgctcttttctctttttggcTTTCTGATCATTACTAGTTGATTGTCTTCCCAGGAACATGCTGGGCCATaacacaatgtttattactgtggcAAATACTGgtatttgtgacccttattgtattAGTGGAACATGACCAGAGTTTAGAACCTAATATAATAAACAGTCTTTAATCTAAGTACCTACCTAACTAAGTTTCTACTACATATTGATAAAATTTAATCATTCTTCAGTTCCTAATAGTTTTTCACGCTAATATTGGCAGAAAAAACATCTTATTGTGTTATATAATTAGAGCGAGTGGGAGGCACTAGTGTTTGGCTGGAAGCGATCTGTAGCTTCACTGTAGGGCTTTTCCAGAAATCACAGCCAATACAAGCAGATAGTAACAAATACACTCTTATACACTCTTTATTGATTTATGGATCACTGAAAGAATGTTGCTTTGCCCTCAGTATATTGTGTTCTTTCTGattaaacaaataatcaatattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651807.1 True 833 lncRNA 0.40 3 34170756 34188629
XR_002651808.1 False 829 lncRNA 0.40 3 34170756 34188629

Neighbor

gene id symbol gene type direction distance location
pdgfc pdgfc coding downstream 169145 33909109 ~ 34001611 (-)
LOC111195843 NA coding downstream 316350 33853069 ~ 33854406 (-)
mrpl18 mrpl18 coding downstream 325805 33840987 ~ 33844951 (-)
grhpr grhpr,grhpra,LOC107550900,LOC107756505,LOC107730677,LOC105908753,LOC107680659 coding downstream 358434 33800102 ~ 33812322 (-)
LOC111195776 NA coding downstream 1544180 32614920 ~ 32626576 (-)
fam198b fam198b coding upstream 22936 34211565 ~ 34220540 (-)
tmem144 NA coding upstream 33250 34221879 ~ 34229881 (-)
LOC103036564 LOC103036564,LOC108425002 coding upstream 470861 34659490 ~ 34674207 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding upstream 487497 34676126 ~ 34708056 (-)
spata4 spata4 coding upstream 538533 34727162 ~ 34731836 (-)
G209628 NA non-coding downstream 2345 34168174 ~ 34168411 (-)
G209625 NA non-coding downstream 19088 34136212 ~ 34151668 (-)
G209623 gria2,gria2b non-coding downstream 42980 34124362 ~ 34127776 (-)
LOC111195844 NA non-coding downstream 97162 34071114 ~ 34073594 (-)
G209575 NA non-coding downstream 331930 33835298 ~ 33838826 (-)
G209682 NA non-coding upstream 197516 34386145 ~ 34386635 (-)
G209798 pitx2,LOC100136798,LOC107699310 non-coding upstream 374810 34563439 ~ 34566518 (-)
G209793 NA non-coding upstream 421407 34610036 ~ 34613396 (-)
G209814 NA non-coding upstream 444156 34632785 ~ 34633216 (-)
LOC111195784 NA non-coding upstream 936534 35125163 ~ 35145580 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 565767 33602099 ~ 33604989 (-)
G209458 NA other downstream 1214671 32955615 ~ 32956085 (-)
gar1 gar1,LOC106513240,LOC107756508,LOC107680945,LOC107586061 other downstream 1530827 32629294 ~ 32639929 (-)
G209303 NA other downstream 2652864 31517433 ~ 31517892 (-)
G209256 NA other downstream 2896354 31273868 ~ 31274402 (-)
G209660 NA other upstream 46289 34234918 ~ 34274593 (-)
egf NA other upstream 431832 34620461 ~ 34656484 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other upstream 521142 34709771 ~ 34759091 (-)
G210059 NA other upstream 2521791 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 2620678 36809307 ~ 36810496 (-)

Expression


Co-expression Network