LOC103047198


Basic Information

Item Value
gene id LOC103047198
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 36317651 ~ 36331749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651810.1
ACTTAAACACACCTACGAGTATAATGGACCCTGCTATTTATACCAAGGAAGATCCTTCATGCTAACACCTGCACCTCTTACAACTTATCCTACATAAAAAGTATCCACAGGAATGTGCAGAAATTTGTGGGCGTGTTTGAGTTTTCCACGGGTTTCTTTCTCTCGTCACGGTGAGTTCCAGGCTGGCAGAGCTGCCCGCAAACTGACCGGATCCTTTCCGTGCCAAATCTCTGCTTTGAGGCTAAACGTGGAATGACCGCAGCACCATCACTTGGACTGAGTCCCAACGACCTACATCTGCTAAACATCGCCCTTATCGGATCCACTCCAATCGATGGCCCTGGAgtggagggagtgagggagggcGAGGCTGATCTTTAGCGGCCCAAAGCCACGCTGTGTTCGGGTGTGTTCACGCGGTCTGAGCACAGAAAACCCCCTTCTGGCTTTGGAAGATAAGCAGCAAGAGAAAAGGCTGTAGCCCGCGGCTAAATCATGCTAACACTAAGCGCCGTGACATCTTCCCCTCATGAATGTTTGAAAGTTGCacttgtgcgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgcatgtgtgtgtgtgtgtgtgtgcgtgtgagtctGGCTGGGCCGCAGGCTGTAACCGCTGGCTGCGAGGGGAGGCGGGCCGACAGCAGGACACGCACTCTGAACCAGCGGAATAGAGACGTGTATCTAGAGCAGGCTAATGAAATTAGCCGCCTGAGAGAGCAAACAAAACACCTATCAATATGCAGCAGCGCCGACCGAGGGAGCTCAGCCTGAGCCACACAGCTTTGCTGAGATTTACAGGTTGGACAGCTGGAGGGACGGCATGTGTGGAAATGCTTGGACGGGTGATGAACGCAGACGCAGGTATAAATACAgTAGGCCAGAGGCTAGCAGGCTGTGATATTTCCCATCATCCCCCACTGCATCGATCCGCCACCACAACTTCCTCTTCCTGCcctccacacgcacacacacacaacacacacacac
>XR_002651811.1
ACTTAAACACACCTACGAGTATAATGGACCCTGCTATTTATACCAAGGAAGATCCTTCATGCTAACACCTGCACCTCTTACAACTTATCCTACATAAAAAGTATCCACAGGAATGTGCAGAAATTTGTGGGCGTGTTTGAGTTTTCCACGGGTTTCTTTCTCTCGTCACGGTGAGTTCCAGGCTGGCAGAGCTGCCCGCAAACTGACCGGATCCTTTCCGTGCCAAATCTCTGCTTTGAGGCTAAACGTGGAATGACCGCAGCACCATCACTTGGACTGAGTCCCAACGACCTACATCTGCTAAACATCGCCCTTATCGGATCCACTCCAATCGATGGCCCTGGAgtggagggagtgagggagggcGAGGCTGATCTTTAGCGGCCCAAAGCCACGCTGTGTTCGGGTGTGTTCACGCGGTCTGAGCACAGAAAACCCCCTTCTGGCTTTGGAAGATAAGCAGCAAGAGAAAAGGCTGTAGCCCGCGGCTAAATCATGCTAACACTAAGCGCCGTGACATCTTCCCCTCATGAATGTTTGAAAGTTGCacttgtgcgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgcatgtgtgtgtgtgtgtgtgtgcgtgtgagtctGGCTGGGCCGCAGGCTGTAACCGCTGGCTGCGAGGGGAGGCGGGCCGACAGCAGGACACGCACTCTGAACCAGCGGAATAGAGACGTGTATCTAGAGCAGGCTAATGAAATTAGCCGCCTGAGAGAGCAAACAAAACACCTATCAATATGCAGCAGCGCCGACCGAGGGAGCTCAGCCTGAGCCACACAGCTTTGCTGAGATTTACAGGTTGGACAGCTGGAGGGACGGCATGTGTGGAAATGCTTGGACGGGTGATGAACGCAGACGCAGagtgggcACATCATTGGACTGATAATTCATTTCCATGAACTGCTAACCATCTAAGCCCTCCACCAACCAGCCATCATCACCTTCATTTGCATTGGTGTCCCATGTTGAAGAAACCTGGACTGCCTCAGATTGGAACTGTATCGTCTTTACTGATTGAGGCCCTTATTGTGAGTGCTTCAATCATACCTTGACTGTGGTGCAACACACTGacccaactgctggtgtgatcaTTTGGAGATGACAGTTTCAAATCACAGTTGGTCACTCTtagtagtgatacgagggaCACAAACAGCTCAGCAatatgtgcagaacatcctgcagccaCATGTGATGCCTCTTATAGTAGAACTGGCATTTTCACTGCCAAGTCCCCAGTTTAATCACCAATTGAGCATTTATGGAAGCAGTTGCAATGACATCTTCAGTAACCTATGattgtagagcaggatctacaggcccagctataacatctgtgggtaaatgtgctgcaggatgccgTACGAAACCTATACACCTCCATGCTCAAATATATATCTCATCTTGTATACAGGCCTCATTGTACAGTTTCCCTCAAACACCTTATTTTTTCCCTCTAATACTGTAATCAATCTATTATATAATTTCATTGTTACATACAATTACATTTCACTTATTCACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651810.1 False 1025 lncRNA 0.53 3 36324637 36331749
XR_002651811.1 True 1562 lncRNA 0.48 3 36317651 36331749

Neighbor

gene id symbol gene type direction distance location
rnf130 rnf130,LOC103033921,LOC107723823 coding downstream 1054243 35168540 ~ 35263408 (-)
ctso NA coding downstream 1150426 35147631 ~ 35167225 (-)
aga aga coding downstream 1531984 34774062 ~ 34785667 (-)
spata4 spata4 coding downstream 1585815 34727162 ~ 34731836 (-)
gpm6a gpm6aa,dmb,LOC107602593,LOC108425001,LOC107569837,LOC107669084,LOC107662965,LOC105906175 coding downstream 1609595 34676126 ~ 34708056 (-)
LOC111195785 NA coding upstream 357850 36689599 ~ 36691324 (-)
LOC107197706 NA coding upstream 458280 36790029 ~ 36792803 (-)
LOC103044642 nt5dc3,LOC108420239,LOC107716671,LOC107679628,LOC107590839,LOC107665729 coding upstream 461633 36793382 ~ 36804302 (-)
LOC103023613 NA coding upstream 490534 36822283 ~ 36827999 (-)
LOC103023303 NA coding upstream 496142 36827891 ~ 36836649 (-)
G209993 NA non-coding downstream 149619 36133130 ~ 36168032 (-)
G209995 NA non-coding downstream 181412 36135860 ~ 36136239 (-)
G209951 NA non-coding downstream 439398 35873875 ~ 35878253 (-)
G209946 NA non-coding downstream 481006 35836203 ~ 35836645 (-)
G209929 NA non-coding downstream 614197 35702789 ~ 35703454 (-)
G210004 LOC108438453 non-coding upstream 7564 36339313 ~ 36345823 (-)
G210012 NA non-coding upstream 171890 36503639 ~ 36503895 (-)
G210014 NA non-coding upstream 285835 36617584 ~ 36617808 (-)
G210065 NA non-coding upstream 402041 36733790 ~ 36734206 (-)
G210074 LOC107712756 non-coding upstream 433665 36765414 ~ 36767551 (-)
LOC103045435 asb5a,LOC108425000,LOC107602595,LOC107740119,LOC107569834,LOC107723803 other downstream 1558560 34709771 ~ 34759091 (-)
egf NA other downstream 1661167 34620461 ~ 34656484 (-)
G209660 NA other downstream 2043058 34234918 ~ 34274593 (-)
G209640 NA other downstream 2104802 34170767 ~ 34212849 (-)
G209529 LOC103042373,LOC108425009,LOC108268400,LOC107730658,LOC107756507,LOC107667842,LOC107550901 other downstream 2712662 33602099 ~ 33604989 (-)
G210059 NA other upstream 378671 36710420 ~ 36710743 (-)
c24h12orf73 NA other upstream 477558 36809307 ~ 36810496 (-)
LOC103033395 arap3,LOC107563596,LOC107717393,LOC106939943 other upstream 833285 37165034 ~ 37204385 (-)
LOC103035726 LOC103035726,LOC108416673,LOC108268898,LOC107730672,LOC107601515,LOC107550867,LOC107680594,LOC107756447 other upstream 3195884 39527633 ~ 39540816 (-)
bend4 bend4 other upstream 3281966 39613715 ~ 39632176 (-)

Expression


Co-expression Network