LOC111195793


Basic Information

Item Value
gene id LOC111195793
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40551912 ~ 40552695 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651817.1
TGCGGTTTGGTGGCTCTTTAAACACTTTGTAGTGAACTATGTTGGTTCATGAGACTTTATGAAGTCTATGTGCTGTTTTTAACAGAAATGGAGGACCATTCTGCAGCAGAACATCTCCGTTTAAGGTTTCAATTCTGTTTTGCATCCTGTGCTTAATGCAAAACCACATCATTGATGTGTTTGCAAATTCGGGCACAGCCATTGTTCCAATAGATGTGGTTTCTAAACTTAATCAGCAGTTGCGCACAAGTATTTCAGCTACACAGTGCACGCTTTGGAACAGTCCTGCCTAAATGGAAACATATAAGTCTAAATGAACCATAATACACATGAATTTGATCAGTTTAATTCTTTTGTCTGCATCATCTGTAtatcactgtttaaaaaatataattttttgtttgtttttcaggcTCAACAGGGAAACAAACCTCATTAAACAGATATTTGGAGGTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651817.1 True 458 lncRNA 0.36 3 40551912 40552695

Neighbor

gene id symbol gene type direction distance location
LOC103045095 LOC103045095,LOC107590823,LOC107753557,LOC108268426,LOC106608917,LOC101062121 coding downstream 196636 40327839 ~ 40355276 (-)
gtse1 NA coding downstream 226472 40318789 ~ 40325440 (-)
actr6 actr6,arp6 coding downstream 234100 40312884 ~ 40317812 (-)
LOC103043462 sycp3,LOC103043462,LOC107666284,LOC107590858,LOC108269409 coding downstream 239171 40308494 ~ 40312741 (-)
LOC103042952 LOC103042952,LOC107695597,LOC107577899 coding downstream 244529 40302159 ~ 40307383 (-)
LOC103028575 LOC108419324,LOC108269048,LOC107693229 coding upstream 17887 40570582 ~ 40582953 (-)
LOC103027945 NA coding upstream 31670 40584365 ~ 40590468 (-)
dnm1l dnm1l,LOC107716704 coding upstream 135097 40687792 ~ 40704331 (-)
dnajb9 dnajb9,dnajb9a,LOC108419513,LOC107576388,LOC107716654,LOC107678282 coding upstream 152434 40705129 ~ 40710254 (-)
LOC103032053 kctd15a,LOC103032053,LOC108419575,LOC108269135,LOC107678290,LOC107554942,LOC107661476,LOC107716706 coding upstream 214358 40767053 ~ 40787591 (-)
LOC103026547 NA non-coding downstream 133 40550281 ~ 40551779 (-)
LOC111195848 NA non-coding downstream 1640 40544773 ~ 40550272 (-)
LOC111195797 NA non-coding downstream 7745 40534851 ~ 40544167 (-)
G211029 NA non-coding downstream 39845 40511636 ~ 40512067 (-)
G211026 NA non-coding downstream 47610 40501199 ~ 40504302 (-)
G211058 NA non-coding upstream 14194 40566889 ~ 40567177 (-)
G211085 NA non-coding upstream 58402 40611097 ~ 40611720 (-)
G211119 NA non-coding upstream 76677 40629372 ~ 40717113 (-)
LOC111195798 NA non-coding upstream 98970 40651665 ~ 40652046 (-)
G211140 LOC108419529,LOC108269134,LOC108431712,LOC105892636,LOC107554941 non-coding upstream 162835 40715530 ~ 40718202 (-)
G210995 NA other downstream 173559 40372805 ~ 40378353 (-)
G210991 LOC103042126,LOC108416825 other downstream 188675 40361258 ~ 40363237 (-)
LOC103023530 LOC103023530,LOC108418701 other downstream 611857 39933116 ~ 39940055 (-)
atp8a1 atp8a1 other downstream 755969 39643544 ~ 39795943 (-)
bend4 bend4 other downstream 919736 39613715 ~ 39632176 (-)
LOC103026726 cnot4,cnot4a,LOC107661486,LOC107753567,LOC107590814 other upstream 5989 40558684 ~ 40570148 (-)
LOC103035761 LOC108419823,LOC103035761,LOC105018411,LOC103373780,LOC104940444 other upstream 606535 41159230 ~ 41219443 (-)
LOC103037199 tmem60,LOC108416913,LOC107661463,LOC107578479,LOC107753588,LOC107696252 other upstream 754251 41306946 ~ 41310751 (-)
LOC103022682 NA other upstream 1040636 41593331 ~ 41600623 (-)
G211539 NA other upstream 1652441 42205136 ~ 42205636 (-)

Expression


Co-expression Network