Gene
RNA
| Item | Value |
|---|---|
| gene id | G51909 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 816021 ~ 816397 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU59146 | True | 377 | lncRNA | 0.46 | 1 | 816021 | 816397 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_00812290_00814461 | CX50.5 | coding | downstream | 1446 | 811366 ~ 814575 (-) |
| CI01000009_00761898_00767155 | PIGA | coding | downstream | 47743 | 761718 ~ 768278 (-) |
| CI01000009_00757227_00760184 | ASB11 | coding | downstream | 55837 | 757102 ~ 760184 (-) |
| CI01000009_00729688_00746565 | SYTL5 | coding | downstream | 68549 | 729369 ~ 747472 (-) |
| CI01000009_00698847_00703072 | NA | coding | downstream | 112949 | 698546 ~ 703072 (-) |
| CI01000009_00830503_00840457 | NA | coding | upstream | 13284 | 829681 ~ 840961 (-) |
| CI01000009_00863406_00870786 | NA | coding | upstream | 46880 | 863277 ~ 872274 (-) |
| CI01000009_00884784_00892234 | CHAF1B | coding | upstream | 68184 | 884581 ~ 892234 (-) |
| CI01000009_00895893_00912998 | MORC3A | coding | upstream | 79030 | 895427 ~ 912998 (-) |
| CI01000009_00973935_00975204 | NA | coding | upstream | 156906 | 973303 ~ 977133 (-) |
| G51933 | NA | non-coding | downstream | 11998 | 803756 ~ 804023 (-) |
| G51932 | NA | non-coding | downstream | 18579 | 797238 ~ 797442 (-) |
| G51931 | NA | non-coding | downstream | 19405 | 796377 ~ 796616 (-) |
| G51930 | NA | non-coding | downstream | 19857 | 795914 ~ 796164 (-) |
| G51928 | NA | non-coding | downstream | 22590 | 793096 ~ 793431 (-) |
| G51982 | NA | non-coding | upstream | 149492 | 965889 ~ 966472 (-) |
| G51991 | NA | non-coding | upstream | 162537 | 978934 ~ 979169 (-) |
| G51949 | NA | non-coding | upstream | 196433 | 1012830 ~ 1055425 (-) |
| G52009 | NA | non-coding | upstream | 266922 | 1083319 ~ 1083582 (-) |
| G51960 | NA | non-coding | upstream | 278151 | 1094548 ~ 1095267 (-) |
| G52098 | NA | other | upstream | 585535 | 1401932 ~ 1407627 (-) |
| G52410 | NA | other | upstream | 1735327 | 2551724 ~ 2562533 (-) |
| CI01000009_02885473_02893975 | NA | other | upstream | 2067291 | 2883688 ~ 2893975 (-) |
| CI01000009_03261739_03262843 | NA | other | upstream | 2444806 | 3261038 ~ 3262843 (-) |
