LOC111195818


Basic Information

Item Value
gene id LOC111195818
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 18113718 ~ 18122487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651846.1
aatcagccaatcaccagTACCAGTTGAGGGAGGGTCTGGATTCCACATTGACCTTTCCAGACCAACTTGATAATGGAGGAGGCGGTCGATAATCAGCCGGAGACGCAGGAATGCCAATATCATCGCCACCACCGCCGCGGTGAACCGGCATTCAGCACCGCCTCAACACATCAACACCGCGGAATAATCCTGACAGATTCAGGAAGGTCACAGCTAGTGTTCAGCAGGTTGTGGGAGAAGAACGTTTGGATTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651846.1 True 255 lncRNA 0.52 3 18113718 18122487

Neighbor

gene id symbol gene type direction distance location
nkx1-1 nkx1-1,nkx1.2lb,LOC107550996,LOC107706723,LOC107679121 coding downstream 34236 18076055 ~ 18079482 (-)
ergic1 ergic1,LOC107679115,LOC107660430 coding downstream 129649 17959960 ~ 17984069 (-)
LOC103037035 npy7r,LOC108436162,LOC108268504,LOC107660446,LOC107558042,LOC107712299 coding downstream 215157 17891868 ~ 17898561 (-)
prelid1 prelid1,prelid1a,LOC107551005,LOC107706737,LOC107660432,LOC107558055,LOC107712305 coding downstream 223144 17886292 ~ 17890574 (-)
LOC103035473 gabrp,LOC108427849,LOC107752068,LOC107664365 coding downstream 248569 17853672 ~ 17865149 (-)
ccdc142 NA coding upstream 43501 18165988 ~ 18176115 (-)
slbp NA coding upstream 54220 18176707 ~ 18180522 (-)
LOC103044938 NA coding upstream 69304 18191791 ~ 18208886 (-)
LOC103028142 cetn2,LOC108436166,LOC102228171 coding upstream 158146 18280633 ~ 18282899 (-)
fut11 fut11,LOC107689135,LOC107710942,LOC107733430,LOC107663104 coding upstream 215205 18337692 ~ 18343003 (-)
G206348 NA non-coding downstream 74569 18034140 ~ 18039149 (-)
G206271 LOC108436176 non-coding downstream 211154 17901879 ~ 17902564 (-)
G206275 NA non-coding downstream 270175 17843285 ~ 17843543 (-)
G206218 NA non-coding downstream 535034 17578285 ~ 17578684 (-)
G206203 NA non-coding downstream 561577 17455279 ~ 17552141 (-)
LOC103029928 NA non-coding upstream 60940 18183427 ~ 18186787 (-)
G206434 NA non-coding upstream 147976 18270463 ~ 18274321 (-)
G206435 acrc,LOC108268437,LOC102779592,LOC100690020 non-coding upstream 153770 18276257 ~ 18278541 (-)
G206443 NA non-coding upstream 157324 18279811 ~ 18280130 (-)
G206444 nsdhl non-coding upstream 161406 18283893 ~ 18286260 (-)
LOC111195732 NA other downstream 71779 18039675 ~ 18041939 (-)
LOC103033759 NA other downstream 261527 17843966 ~ 17852191 (-)
LOC103041988 rnf145,rnf145a,LOC107664350,LOC107669103,LOC107723822,LOC107740095 other downstream 812725 17259786 ~ 17300993 (-)
drp2 drp2,LOC107724836,LOC107593231 other downstream 1748071 16203937 ~ 16365647 (-)
G205670 NA other downstream 2281624 15831650 ~ 15832094 (-)
G206575 NA other upstream 715882 18838369 ~ 18838916 (-)
thoc2 thoc2,LOC107733416,LOC107741598 other upstream 915207 19037694 ~ 19127726 (-)
LOC103046671 NA other upstream 1802544 19925031 ~ 19994802 (-)
LOC103046056 NA other upstream 1834990 19957477 ~ 19968031 (-)
LOC103040644 LOC108443111 other upstream 1984610 20107097 ~ 20274905 (-)

Expression


Co-expression Network