Gene
RNA
| Item | Value |
|---|---|
| gene id | G50947 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000009 |
| NCBI id | null |
| chromosome length | 16003125 |
| location | 874102 ~ 877421 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU58017 | True | 3320 | lncRNA | 0.42 | 1 | 874102 | 877421 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000009_00852319_00853083 | CX45.6 | coding | upstream | 20641 | 851242 ~ 853461 (+) |
| CI01000009_00805606_00808374 | NA | coding | upstream | 65698 | 804904 ~ 808404 (+) |
| CI01000009_00719164_00724772 | SRPX | coding | upstream | 149051 | 719164 ~ 725051 (+) |
| CI01000009_00704243_00710805 | NA | coding | upstream | 163297 | 704065 ~ 710805 (+) |
| CI01000009_00620687_00621072 | NA | coding | upstream | 252565 | 620687 ~ 621537 (+) |
| CI01000009_00913995_00916434 | COMMD6 | coding | downstream | 36574 | 913995 ~ 916565 (+) |
| CI01000009_00920570_00955979 | TBC1D4 | coding | downstream | 43007 | 920428 ~ 956574 (+) |
| CI01000009_01034561_01035452 | KLF12 | coding | downstream | 157140 | 1034561 ~ 1035728 (+) |
| CI01000009_01110684_01111118 | NA | coding | downstream | 233263 | 1110684 ~ 1111601 (+) |
| CI01000009_01183737_01206031 | NA | coding | downstream | 304670 | 1182091 ~ 1206857 (+) |
| G50984 | NA | non-coding | upstream | 33183 | 837940 ~ 840919 (+) |
| G50978 | NA | non-coding | upstream | 74243 | 799627 ~ 799859 (+) |
| G50973 | NA | non-coding | upstream | 86612 | 786884 ~ 787490 (+) |
| G50921 | NA | non-coding | upstream | 97593 | 776284 ~ 776509 (+) |
| G50917 | NA | non-coding | upstream | 113829 | 757122 ~ 760273 (+) |
| G50954 | NA | non-coding | downstream | 850 | 878271 ~ 881321 (+) |
| G51001 | NA | non-coding | downstream | 17234 | 894655 ~ 894871 (+) |
| G50933 | NA | non-coding | downstream | 27911 | 905332 ~ 908981 (+) |
| G51017 | NA | non-coding | downstream | 96290 | 973711 ~ 973959 (+) |
| G51028 | NA | non-coding | downstream | 118623 | 996044 ~ 996272 (+) |
| G50920 | NA | other | upstream | 103869 | 769841 ~ 770233 (+) |
| CI01000009_00094836_00095813 | NA | other | upstream | 778315 | 94371 ~ 97230 (+) |
| CI01000009_01431700_01434463 | NA | other | downstream | 545426 | 1429873 ~ 1435328 (+) |
| G51122 | NA | other | downstream | 802725 | 1680146 ~ 1681966 (+) |
| CI01000009_01897343_01919208 | PIKFYVE | other | downstream | 1016814 | 1897343 ~ 1919516 (+) |
| G51274 | NA | other | downstream | 1377678 | 2255099 ~ 2350486 (+) |
| G51529 | NA | other | downstream | 2184612 | 3062033 ~ 3062587 (+) |
