G50954


Basic Information

Item Value
gene id G50954
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 878271 ~ 881321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58024
CTCGATGTGTAAGCTGAGTTTCCTTGCTGGCTCTCAAAGGTTTTAACTGTTAGTAAGTTGCCATTCCTTTGATCACCTCTGTTTTCTTGACTTTACTTTCGCTTTCTATATATGTGTATTGTTTGTGTATGTTTAGTAGTATAGTCTCTGTATCCGTAGTTTCATATATATTAAATACATTATATTCATGCTCGATTGTCTTTTTTGCTCATGCAACAAACCCAGGTCACTTTAACGTTTCGATCCAGTATCCTTGCTTTACGCATTGATGCTAGAATAGGAAGTCTTTCTCGTGGCCAGAGAAAAACCTTCCTTTTATAATCGGCTATGAGGAGCTAACGGTTTGCTGGACAAACTAATAGTTTCTCTAAATTATTATCAAACCAGAACTAATCATATATGTGATTGATTATAATTCGTTTTAATTAACTCACAATATATGTATAATTCCCTCTCGGGTCAGTATATGTATTATAATTAATCATAAAGCTTTATGATTTATTATATTCATGTATTTCACCCATAAATTAATTAAATACCTGTACAGATTCGCTACACCAGGGACGTTGTGGAGTTGGCAGTGGTTGGAGGAGGCCCGAGGGCAACTCCTTGGGGGTCTTGGATTGTGCACAGACATGGCAAGATTTAACATAGGTTGCAACGTCTTTAGTCATTGATGGCCACCAGAAGGAGTTTTGTAACAGGCGGAGGGTACGGGAAGTTCCAGGATGACCTGAGCTTAGAAGTGTGTGGACCCATTGAATGACTCGTAGACGAAGAGCTTGTGGTACATAATGTTTGTTTGGGGTTGGCAGGTGGTGGTTCTTGTTGATGGGCCCGTTGGATCTCTTCCATTAGGTCCCAAGTGACTAGAGCTAGAATGACTGATGGAGGGAGAATAGACTCAGGTGGGATACTTTCAGCGGGGGGGATCATGGCGTCTGGACAGGGCGTCAGCCTTACTGTTCTTGCTGCCTGGTCTGTAGGTGGCTGTAAACTGGAAGCGAGTGAAGAAAAGGGACCAATGAGCTTGACGTGGATTCAGACGTTTAGCACTCTTAATGTACTTCGGGTTTTTATGATCTGTGATGACTTGAAAAGGATGAATAGCCCCCTCAAGCCAATGTCTCCACTCTTCAATGGCTGCCTTCATCAACACCAGTTCTTTGTTTCCCACATCATAATTGCGCTCGGATGAAGTCAGTTTTCTTGAGAAAAATGCGCAGGGGTAGAGTTTACCTGGTTGACTGTGATGTTGTGAGAGTACAGCACCAATCCCACAATCTGAGGCATCTACTTCAACCACAAAGGGGAGATTGGGATCAGGATGCTTAAGGATAGGAGCCGTGGTAAAACTGTCCTTGAGTTTGGTGAAGGCTTTTGTGGCTTCTTCAGACCATTTGAGTTTAGCAGGTTTTCCTTTTAAAAGTGATGTCAATGGAGAAGCAGTCTGACTGTAGTTTCTAACGAAGCGTCTGTAGAAGTTCGCGAAGCCTAGGAACCTCTGTAATTCCTTTATCGTAGTAGGTTGGGGCCATTCAGTGACTGCTTGAACCTTGGACACTGTTGGGTGATTCCACTGATCAGCACTGATCTTGATAGGTGGTGTGCATGGTTGAGTTGGAATATTCAATTTAGCAATGAGGTCTTTATGAATAAAGATCAGCGATCAGCGCTGTTGAATCAATAGAAATATTTTCAGTAGTCAGCCGAACAGGAAATGTAAGTAACTTGATAGGGAGGAGAGAAAATTGTTCAGTATTTACCCGGTTAGTATTCTTATTGGTTTTCCGGGCATTGTGAGGGCATTCCATGCTGTGGTGGCCTGCTTCACCGCAGTAATAGCAGAGGTTGAGCTCCCGCCGTCAAATTCTCTCCTCCTCAGAGAGTCTGGAGAACCCCAGTTGCATAGGTTCCTGACTTGGCCTTGATTCAGGTATTGAAGTGAGCTGAGGAACATGGTGAAGCTGATGTGTGGTAGTAGTGCTTGACTGTGACCATCATGCTGATCTCCTCTTGGGAGCATTTCTCATTAAGTTAAATTCTGATTGCAAGCGTCACATACTCAGAAATTGAAGAATTCTCACCCTTGCAGGCCAGTTCGTTTTGTTTATCAGCATTAAGACTTTGTTGAAACACAGCCTTCAATGAAACATCGTTCCACCTACTCTGAGCCGCGAGCATTCTGAATTCAATGGCATACTCTGTAGCGGTACGGTTACCCTGAGACATTTGAAGTAGTTGTGCTGATATATCCCTGCCCCCAGCGGGATATTCAAACACATCTCATAGCTGATGAATAAAGTAATCATAGGAAGTTCTAAACATCAAATCAGCCTCCCAAACCGCTGCAGCCCAATCGATCCCTTTCCCAGAGAGTAGTGTCTTCAGAAAAGCACATTTTTTCCCCATCAGAATTAAACTTGTCCTTCTGGTTATCAAAAAAAAAAAATATCTCCACCTGGCAAATAAACCCTCTGCACTGTTGAGCAGAATCGTCAAACTTATCAGGCATAGCAAAGCTTACCGTTTGCGCCGTGGATGGAGGAAGCGATCGAATGTAGTGGGTCAGATATTCGTTGGCAGACTGGAGCTTGTTGAACTGTTCCTGGTATCCTTTAAGCACTTCACTTTGATAAGCAAACGCCGCTTGAAGCTCAGAAACTTCTGCTGGATTCATCAGTGGCGAAGTATTCTGTAATGAGGAGGCGGACGCCGTGTTGGAATCCATGTGCTGAAGTTTATTAGGAACAGTCCAGAAGGAGCGTGAAGCCAAGCAAAGGGTCAAAACCACAAAAAACAGTCCAAAAGGCAAACAGGTAAAGGGGTAGTCCAAAGGCAGGTGTCGAAAAGGCAGGCAAGATGGTCGAACACAAAAGCAATCCAAACAGGCAGCCAAGTCAAAAATGGAAATCCAAAAATCAGTAATCAGAGAAAACAGGCAAATGATCATACACAAAGTAAACAGACAGTAGATACAAACGCTTAGTAAGGCAGTAGAACTGGCAATACTTCGCAAGGCCTGTTTGGTCATGCAATGCTTAAAATGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU58024 True 3051 lncRNA 0.43 1 878271 881321

Neighbor

gene id symbol gene type direction distance location
CI01000009_00852319_00853083 CX45.6 coding upstream 24810 851242 ~ 853461 (+)
CI01000009_00805606_00808374 NA coding upstream 69867 804904 ~ 808404 (+)
CI01000009_00719164_00724772 SRPX coding upstream 153220 719164 ~ 725051 (+)
CI01000009_00704243_00710805 NA coding upstream 167466 704065 ~ 710805 (+)
CI01000009_00620687_00621072 NA coding upstream 256734 620687 ~ 621537 (+)
CI01000009_00913995_00916434 COMMD6 coding downstream 32674 913995 ~ 916565 (+)
CI01000009_00920570_00955979 TBC1D4 coding downstream 39107 920428 ~ 956574 (+)
CI01000009_01034561_01035452 KLF12 coding downstream 153240 1034561 ~ 1035728 (+)
CI01000009_01110684_01111118 NA coding downstream 229363 1110684 ~ 1111601 (+)
CI01000009_01183737_01206031 NA coding downstream 300770 1182091 ~ 1206857 (+)
G50947 NA non-coding upstream 850 874102 ~ 877421 (+)
G50984 NA non-coding upstream 37352 837940 ~ 840919 (+)
G50978 NA non-coding upstream 78412 799627 ~ 799859 (+)
G50973 NA non-coding upstream 90781 786884 ~ 787490 (+)
G50921 NA non-coding upstream 101762 776284 ~ 776509 (+)
G51001 NA non-coding downstream 13334 894655 ~ 894871 (+)
G50933 NA non-coding downstream 24011 905332 ~ 908981 (+)
G51017 NA non-coding downstream 92390 973711 ~ 973959 (+)
G51028 NA non-coding downstream 114723 996044 ~ 996272 (+)
G51031 NA non-coding downstream 119675 1000996 ~ 1001222 (+)
G50920 NA other upstream 108038 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 782484 94371 ~ 97230 (+)
CI01000009_01431700_01434463 NA other downstream 541526 1429873 ~ 1435328 (+)
G51122 NA other downstream 798825 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1012914 1897343 ~ 1919516 (+)
G51274 NA other downstream 1373778 2255099 ~ 2350486 (+)
G51529 NA other downstream 2180712 3062033 ~ 3062587 (+)

Expression


Co-expression Network