G33160


Basic Information

Item Value
gene id G33160
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 57629 ~ 58188 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44541
AACTTAAGCCTTCAGAACAGAAATGTCCTtcacaaattattaaaaaagaaataaagccaGATTGCAGtcaatttacatttactgtcaatgaaacaaacatatatacatcCATTATTTTACATGCTTCTAAGCTGTGCACTTTGGGTGGCAATTTCATCCTCCAGAAACTTAAGCTGGGAGAGTCTTTAGCAGCCCTCTTCAGTGCATTTGATTTTGAGAGGAGCTGTACCATTTTGCTCCCAGCCTTGCCCTCTGCTTGCTTCCTGTCTGATGAACACTTAAACTTTATTCTCACAAAAAAATCCTgtcataaaaaaagtattttagaatCGCTAGCTATGTTGTAAAAATGTTTGCAAAGACCTACACgaaaaagctaagctaagctagcaaATTAGCCTGCTGGCTAGCAAATCAGTTAGCAGTATTCCCCCTAATTCGTTTAGTTACAGTGAAATAAAGCTGATAGTTAATGATAAAGTGGGAATTGGGGTCCTTACACTAGCTATAACACAACACAGACACCgtgaattaaatatttaccaCAAAGATGATCAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44541 True 560 lncRNA 0.36 1 57629 58188

Neighbor

gene id symbol gene type direction distance location
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 10066 42719 ~ 47563 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding downstream 398983 457171 ~ 483231 (+)
acbd4 LOC107662569 coding downstream 677640 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 694400 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 780117 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 823179 881367 ~ 881438 (+)
G33147 NA non-coding upstream 18613 38493 ~ 39016 (+)
G33141 NA non-coding upstream 33767 21445 ~ 23862 (+)
G33211 NA non-coding downstream 212462 270650 ~ 306318 (+)
G33206 NA non-coding downstream 229844 288032 ~ 324053 (+)
G33231 NA non-coding downstream 303239 361427 ~ 362460 (+)
G33235 NA non-coding downstream 311477 369665 ~ 372776 (+)
G33246 NA non-coding downstream 337923 396111 ~ 401312 (+)
rpp30 rpp30 other downstream 38115 96303 ~ 101051 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other downstream 70168 128356 ~ 166390 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other downstream 122881 181069 ~ 231917 (+)
LOC111192417 NA other downstream 360822 419010 ~ 424471 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 924979 983167 ~ 985381 (+)

Expression


Co-expression Network