rpp30 (rpp30)


Basic Information

Item Value
gene id rpp30
gene name rpp30
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 96303 ~ 101051 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44543
ATGCTTCAACAAGCTGTACCGCTCGCTAGCATtttGGCTACTCCACAGTTGCAATAAATTATGTAGTGGAGGGGCAAAAGAAGAAACAGCTAATTCCGACTCCGCAACCCTTAGCAGAGCTCTTTGAGACGTTTCCAACAGTACAGGGAAAATCCAGACCTATTAAAGTGCTGAACCGATTGACAGTTGTGGCCACAGATGCCTCTCACTTTAGGCCTACTAATGAATACAAGAATTTTGACCTTTTGGCCGTTCATCCCAAAACAGACAAACTCTTCCATGCAGCCTGCATGAACTATGATGTGGATATTATCTGCATATCAGCCACTGAACCACAGTCCTTCCATTTCAAGAGGTCACCGGTAAACGGGGCTATTGAAAGGGGAGTGTTCTTCGAGATAAGCTACTCAGCAGGCATTAGAGACCCCACCATGAAGAAGTACACCATCACAAATGCCGTCAATCTAATATCTGTGTGCAAGGGAAAGAATGTCATTGTGGCCAGTGGGGCAGAAGCGAGACCAGGGGAACAGCGTTGGGCATCATCCACACCATGAAGAGACCACAGCTGCCAACTGAGCAGCCAGAGGAAGAAATTCCAGCTGCCAAAAAAGCCAAAACTGATGATGGCTCTTTAATTGTGTAACCAATGGAGAGCAgagttgcatttttttattatttaactatttcttgattttttttttttgtgaatatacTGAAGCTCATATTATTGAAGATTTGCGTTCGTATCAGTACTTTATTAAAAGAACGCAGCAaagaaaatagtttttatttagaaacaaaatatgacaaaattgCAAGCAACAGAGAGAATCTGAAAATGA
>XM_007251149.2
AATTCCCAAGAGCAGCCATCAAAATCGCAAACCCACATGTTTAAACAGTGTCCATGCTTCAACAAGCTGTACCGCTCGCTAGCATtgtaagttaactagctagcttaatAAGTTAGCAACGCTGCATGGCTacaaaataattacaattacaatattgCTAGAGAAAGTCTGTTCTCTGTCAGATATTACTCTCAGCATTATAAACCCatgtgtatatttgtttttggCTGTGTTGTAAGTAGCTAcattggttagctagctatccTAGGTTAGATAtctaatttgtatttaaaaaaaggaatatgTCTGTGTTTATGGATTTAAACATCACCGCTGGCACTGACAAGGCAAAGCTCCAGAGCACTATTGAGACCGCCGCTCACCttGGCTACTCCACAGTTGCAATAAATTATGTAGTGGAGGGGCAAAAGAAGAAACAGCTAATTCCGACTCCGCAACCCTTAGCAGAGCTCTTTGAGACGTTTCCAACAGTACAGGGAAAATCCAGACCTATTAAAGTGCTGAACCGATTGACAGTTGTGGCCACAGATGCCTCTCACTTTAGGCCTACTAATGAATACAAGAATTTTGACCTTTTGGCCGTTCATCCCAAAACAGACAAACTCTTCCATGCAGCCTGCATGAACTATGATGTGGATATTATCTGCATATCAGCCACTGAACCACAGTCCTTCCATTTCAAGAGGTCACCGGTAAACGGGGCTATTGAAAGGGGAGTGTTCTTCGAGATAAGCTACTCAGCAGGCATTAGAGACCCCACCATGAAGAAGTACACCATCACAAATGCCGTCAATCTAATATCTGTGTGCAAGGGAAAGAATGTCATTGTGGCCAGTGGGGCAGAAGCGCCTCTTAACTTGCGTGGTCCATATGACATTGCCAATCTAGGGCTGATATTCGGCCTTTCTGAGGGGGATTCAAAAGCAGCGGTCTCAACTAACTGCAGATCTGTTGTTCTGCATGgagAGACCAGGGGAACAGCGTTGGGCATCATCCACACCATGAAGAGACCACAGCTGCCAACTGAGCAGCCAGAGGAAGAAATTCCAGCTGCCAAAAAAGCCAAAACTGATGATGGCTCTTTAATTGTGTAACCAATGGAGAGCAgagttgcatttttttattatttaactatttcttgattttttttttttgtgaatatacTGAAGCTCATATTATTGAAGATTTGCGTTCGTATCAGTACTTTATTAAAAGAACGCAGCAaagaaaatagtttttatttagaaacaaaatatgacaaaattgCAAGCAACAGAGAGAATCTGAAAATGACaaacaaaactataaataaataatggaagAAACAA

Function

symbol description
rpp30 Predicted to enable RNA binding activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic and tRNA processing. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of nucleolar ribonuclease P complex. Orthologous to human RPP30 (ribonuclease P/MRP subunit p30).

NR:

description
ribonuclease P protein subunit p30-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0008033 tRNA processing biological_process
GO:0005840 ribosome cellular_component
GO:0004540 ribonuclease activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K03539 RPP1, RPP30; ribonuclease P/MRP protein subunit RPP1

RNA

RNA id representative length rna type GC content exon number start site end site
TU44543 False 845 lncRNA 0.42 9 96356 101016
XM_007251149.2 True 1349 mRNA 0.41 11 96303 101051

Neighbor

gene id symbol gene type direction distance location
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 48740 42719 ~ 47563 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding downstream 356120 457171 ~ 483231 (+)
acbd4 LOC107662569 coding downstream 634777 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 651537 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 737254 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 780316 881367 ~ 881438 (+)
G33160 NA non-coding upstream 38115 57629 ~ 58188 (+)
G33147 NA non-coding upstream 57287 38493 ~ 39016 (+)
G33141 NA non-coding upstream 72441 21445 ~ 23862 (+)
G33211 NA non-coding downstream 169599 270650 ~ 306318 (+)
G33206 NA non-coding downstream 186981 288032 ~ 324053 (+)
G33231 NA non-coding downstream 260376 361427 ~ 362460 (+)
G33235 NA non-coding downstream 268614 369665 ~ 372776 (+)
G33246 NA non-coding downstream 295060 396111 ~ 401312 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other downstream 27305 128356 ~ 166390 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other downstream 80018 181069 ~ 231917 (+)
LOC111192417 NA other downstream 317959 419010 ~ 424471 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 882116 983167 ~ 985381 (+)
trnal-aag NA other downstream 891261 992312 ~ 992518 (+)

Expression


Co-expression Network