LOC103039306 (pcgf5,LOC108410714,LOC106589380)


Basic Information

Item Value
gene id LOC103039306
gene name pcgf5,LOC108410714,LOC106589380
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 128356 ~ 166390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44554
atgatgctccttctCGTAGTCACTGAACGCATCCCGTCCAGGAGAGTAAAAAACACTGCCAGCCCACACtgaaaactgattggctgactcagattttatctgacttgtggGCATCAGGGGgccgttattgatatgcggCAACTTCTGGGAGACATGGGACGTCTGCATTAATCAGCCAGTTGGTTCTGAAACTCAAACACAGTTAGGCCATGCTGCAAGATGGTTATCTGACTTTGTTAACTGTCTGAACTGACTTTTACCTAATTAAGATGTGGCAGTGCGTTAATAAACCAGCATTAGCAAAACCTTTTAGTGGTTCTGAGTAGATGTACCCAATAAAGTAGAGTAGATGTACCCAATAAACTGGCAACTTGTTAACTTTATACATCTATAGaactaattattatatatttgagaATACGACAGATCCTTACAgcctgtgtgtctctctctgcagctagATGTTCTATGCAATGGAGAGATCATGGGGAAAGATCACACCATGGAATTCATCTACATGACGAGATGGAGGCTTCGGGGTGAAAATGACTACCCAATGGTACTTGAATATCGACCTCGAATTGACTTTGGCTAGATGATGAGCTGATGCTCCTGCACTACTTTCAGCCTATCAGCACACAGAACAGTGAATGGTCGTGCTACACAGTAGCGACTCAAACACACCAGTCtactttcttttacattttttttagcagttcCTCTCCAGGAGTTTTTACTCACTCTTCAGATTTCCCAGCACAGCAGGGACTGGAACTCTTGGTGCCCCGGATTGTTGGAAGGATGTTTGTTTGCCATGTGTGTGTCTCGCTCTGTTTGCTGGTCTAGCAGCAGAACTGTTGACGTACGTTTTCACGGGCCCAGGAGAGGAGTCTCCAACTCTTCAAGTGCATTCAGTCGTTATGTAAGTTGCTTGTATATCAGTAACTATTATAGTGCCTTTTCCACACATTGTGTTTCAGTGATGATAGTCACTGATCCCAGGAGCCTTGTTTCTGTACAGATAGGCCTGTGTAATCTGAATTCTGTTCATTGTGttcatataaaaatacacacagtgAAGTGTCTTATCAGCCCCAGTCTTCATCTGgtattattaaaataagctacttgtgtcaatttcatatttttattacatcCCTCGCTGCCTCGTACTGTACCTGACCCGTAAAGGACAGCAGTGTCTACAGTATCTACTGGGATTTGttccaatatgttttttttgttgtttttttttatgaagaagGAAGCTTTATTATCAGCAGTAGAGAAAGCATGCAGGCGTTCACTAGAGTGAAAGAAGGAATAGATTCATACGTTATACAACTGTTTAGAATTACCATCTGGAGTTTATATAGTTTAGCCAGTTACAGTAACTAGCAAAAGTATAGACAACacatttttgcactttttattaTGCAATTGCCTTTTTTTCTTACAGGTTTTAATTTTTCTGTGTTAAAAGCAAACAGATTCATTGGTCTTTCATGTTTGATCttgacctccacagttcccctgaacagTGTTCTGCACCGTAAAATCTTTCTTTAGTGGGAAAATACTGCTAGTCACTGCAGCTCCAAATAGACATtgtgaaattaaacaaaacattaattgTGGCATGTATAAGAAATATGacaactttattttttgtttgtttctaatCTGCTGAGAAAtctaatataatgtatatttaacaaCACATGTAATTAGACCAGGTTTGGGCACCCTTTACCAAATGACAatgactgttttcttttttccacaatttaaatttaaatgtaaaaccttcaaaaaacttcaaattaattacaattatacgataaaaatattatttaatattgataGCTAAAATACAAGAGTTTGGTGCAACTGTAGAAAATACATATCCATACATCTGTATTATACATGTGTAGTTTAgttttagcagtttttttttttaagccagaAGTTGCACTCATAGCTTTAGCATGCACCATTTGATACTGTTTGCAGCAGTAAAAACGAAGGTATACCCTTAAATGTTAAATCCATAATTAATTGGACTCTAAACTTTTGTCTGTGTTAAAGCAAACAAATTAATTAGTCTTTTTTAGATCTGATCctgacctccacagttcccctgaacagTGTTCTAAGCCGTAAAATCTTTCTCTAGCACTGGTACAATCTTTGAAGAGCCACAGAATTTATAAAACTTATGGAAATTTGATCAAACTGACGGTTCCTAACTAGAGTTAGGATAGAAATGCCTCTGACCCAATGTGCTAATCAAGGTCTGAGACCTTGTCTGTGAAATTGCACAGGgcacagtttatttttaaggctataaaatatggaaaaaaactacatttcccacatctcagtaaaaaaaaaaaagaaaaagacaaatgtGTCATTTAGCCAAGGGTGCCCAAATggtcatatacagctctgaacaaaaatgagaccacttaaaaatgatgagttcctctggaatataatcaagaggaagatagatgatcacaagccatcaaaccaagctgaactgcttgattttttgcaccaggagtgacataaagtttttcaaaagcagtgtgtaagactggtgaaggagaacaaacatttctcattttctgcaaagaaatgctcttaatgacaatatttttatttggaatttgggagaaattttgtccatagtttatagaataaaaaaacaatgttcattttacacaaacatataactgtaaatagcaaaatcagagaaactgattcagaaactgaagtggtctcttaattttttccagagctgtatatagttcTTTCAAAAGTCTTTTTTTCCACAGATATGATTTGAAACCTTTTTATAGTCCTCACACTTTCAGTGACCCCTGTGGCCTGTAGATGTGGACACTGGTGTGGTGGACCACACATCAGGATGGACATGTTTAAAGTGATCAGTCAGAATAACTTTGCATTGATTTATAGTGACCCTGTTCCCTCAGGGGAAACTGGACCAAAACCAAGGTTTTGATATGACAGTGGAAAAATACTGCTATTAACTGCAGCTCTAAATAGACAGCGTTCTGTATCTGCATAGTATTCCAAGCTATTACTCTCCGCCTCCAGTTTGTTTACATATCCTGTCATGGGAATGACCCCGAAGATCTCAAAAGCTtgggctgttttattttttttttttaaagctaaagtttctattttattgtaccatatattgcattttgtttttgctttttcattGATCAGATTACTTTTCTTTGGGGTGTCTTCTTAGGCGTTCTAGCTTTAAAATGAGGCCTGCTATCCGGTGTCATGTCAAAAAATGCTCAAAGTGTCCAAATGTCTATTAATTATTGAAGGCAGAAGCTGAGGGGCTTTCTACTGCTTTATCCCACTATTTTTCAACCATATAATCTCAAATCCCAAACTGTTCTAAGGTTAGAGGATTTCACCAAAGACACAAAGCCTTgggctatgttcacacagcaggtaaaggTGGCCCAAACTttgacaaaacatttttttcatatgtgACACAGATATGtggcaaaacactgaatttgatGTAATTAATTCTGATTAGGCCACTTTAATATGAGGAAAGCCAACAGATCAGAATTCATGTGACTTTTAAATcaaggagaaggaaaaaatggATGTTAGGGAATGACAGGAATTCTGGTTCAGAATTACAGTACTACAATAAATTAAAGCCATattaaaaccacaaaaaaaatgcaatagatcatctatagccctatccggacgggattcgtttttcagggggtcctggggtcattttctcttttatgcagggtcctctgtgattttattcccgtccagaacgggcatgtatgtttttctcagacgtcctctgagaaatttacaggctgaattacctactgtttttcgctgaactccgtccggacgcacatctgagtttcgtcacctcccatttaataaaatagctatttgtccactgccatgcaccataattacactttgggtgcacgtttccacagagatccacgtaaaaacaaCAGCGGGTGGAAATGAAgtagctactgaacgtgatttTGTGACcgaaaagccaaaaaactcactggtcctcctgtttttttaattgcagtccggaagcaagagttttatcactgagtagaagtgtgaaatatttttcacagacgtccccctgagaaactaatcccgtccagatagggcttttgaCATTAAATATTCATGTAAAAATCGTTTTAATTATTtcggtaaacaaacaaatgctaaggctaagctGTCAACTCAGCTAAGCTTACTAAATCTACGTTTTAGTTTCCCAACGTTTTATACCTTTTCATTTGTGCAAGGAGGTCATAAAAAATCTACTTGAacctgtataaaaaaataatcctaTAGGAAACACTGAGACTTCACatttagtataaatatttgGGTTGATCAAACTAAATAGAAGACCCATATTGCAACCCCTCTGTATTTGaagaaacgtaaaaaaaaaaaaatcaaaatgcaGCCATATGaaaacattgttgaaagaaaataaaaaggttaaaagcTAAAGTACAGAGATGCAAACCAAAGAAGTGGGCATGGCCAAATAACGTGCCCTTTTTAGAGAATGCGTGAACGCTTGTAGGTGCATGAACTTTTCAAACAAATGTCAGATAttgatattattaaaataaaatttatgcCACTTTACCTGCTGTAGGAACATAACTTGAGGCCTTCTCGAAATTAAAGCTAAACAATGAACTAAACTTGCCTTACAGCTGCAGCATTCACAGATGCTTTAAAAGCCTAGCAAAACAAGTATGTAGACATTATTTCATCCAAAATTCACAAGCTTccgtatgtttttgtttgactaattatttttttcatgaaacCAATTTTGATGGATTTTTACAGATAAAGGTCAGAACCGTTCATAAACTGTAATTTGAAGCCTAAGAATGAAGCCCTTTCTGGTGAGTTCATTAATGTGTGTATATCAGTATGTATGTTGGGGGGAAAACACCAGTAGGCTAGTGGTTTAATGTGGTAGCTGAATAAATGTTTAGACCGAATAATCCTTGAAATGTCCTTGTGCTGCAATgaattatatgtatttttgtaacaaGAAGCACTtgtagatatatataaaaaaaagttgtatgtTTAACAAACATAAGATGCTGCTTAGAATAATCTATTTTTCAATGTAAATGTGCCTGAGATCATTCCTATAGAGATTAGATATGTACATACTGTAAGCGACTTATTATATATGTGAAGCATTGTTTAAATACATGCCGGTCGATGAATGAAGAATTGCCTGTGTTGTTATTTGGATTACACagtatttgaataaaaaaacaacctg
>TU44555
TCTGCTCCTCTAGGTACTTTCTGTCTCATGTGACGAGCCAGGTCGAGCCCTAGAGAAGCGCAGAGGCTGAGAGAGGGAGCAGCGCGCCACCATGCAGGAGGAGTGAGGAGGGCTGCTGCTCtgtctgtgctgctgctgctgctgctggaagaagaggaggaggagataCAGAGGGCTTCAGCACCCGAGCTGAATGGTGAAAATGCAGCACACATGATATCGAGATATCACCAAACATTGAGCATGGCTGGATGTAAAGGCAAGGCGCCATCCAGCAAAGCCAGGCTTTGAGCCATACCTCCAGCTGTTCTCTCCATATATCTTCATCCGCCctgtacacacactctcccACATCCCCCTTCAGCCTGGTTGCAACAGGTGAAAATGACCACGCCAAGGAAGCACTTAGTCAAGGATTTCAACCACTTCATCACCTGTTATGTGTGTAAAGGATATCTGATCAAGCCCACCACCGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGCATCGTCCAGCATTTCGAAGACAGCAACGACTGTCCCAAATGCGGCATCCAAGTGCACGAAACAAACCCACTGGAAATGTTGAGATTGGACAACACTTTAGAAGAAATCATATTCAAGCTTGTGCCTGACCTTAGAGAAAAGGAGCAACAGCGGGAGATTGAATTCTGGAAAAGGAACAAGTCAAAAGAAAACGGTGATGATGATGGCCCCAGGTGTAAAAGGGCGAAGCTGGATGACGACATTGATGACAGAGGGGACGGAGACTACCATAGAAGTGATCCTCAGATAGCCATCTGCCTGGACTGTCTACGCAACAACAGTCAGCTGGGAGAGAATATTGTAAAGGTCAGCT
>XM_022669406.1
TCTCCACTGACTGAGGCCAGTTCCGTATTTCTGCTCCTCTAGGTACTTTCTGTCTCATGTGACGAGCCAGGTCGAGCCCTAGAGAAGCGCAGAGGCTGAGAGAGGGAGCAGCGCGCCACCATGCAGGAGGAGTGAGGAGGGCTGCTGCTCtgtctgtgctgctgctgctgctgctggaagaagaggaggaggagataCAGAGGGCTTCAGCACCCGAGCTGAATGGTGAAAATGCAGCACACATGATATCGAGATATCACCAAACATTGAGCATGGCTGGATGTAAAGGCAAGGCGCCATCCAGCAAAGCCAGGCTTTGAGCCATACCTCCAGCTGTTCTCTCCATATATCTTCATCCGCCctgtacacacactctcccACATCCCCCTTCAGCCTGGTTGCAACAGGTGAAAATGACCACGCCAAGGAAGCACTTAGTCAAGGATTTCAACCACTTCATCACCTGTTATGTGTGTAAAGGATATCTGATCAAGCCCACCACCGTGACAGAGTGCCTGCACACCTTTTGTAAAAGCTGCATCGTCCAGCATTTCGAAGACAGCAACGACTGTCCCAAATGCGGCATCCAAGTGCACGAAACAAACCCACTGGAAATGTTGAGATTGGACAACACTTTAGAAGAAATCATATTCAAGCTTGTGCCTGACCTTAGAGAAAAGGAGCAACAGCGGGAGATTGAATTCTGGAAAAGGAACAAGTCAAAAGAAAACGGTGATGATGATGGCCCCAGGTGTAAAAGGGCGAAGCTGGATGACGACATTGATGACAGAGGGGACGGAGACTACCATAGAAGTGATCCTCAGATAGCCATCTGCCTGGACTGTCTACGCAACAACAGTCAGCTGGGAGAGAATATTGTAAAGGTCAGCTGTTTTAaATACGACAGATCCTTACAgcctgtgtgtctctctctgcagctagATGTTCTATGCAATGGAGAGATCATGGGGAAAGATCACACCATGGAATTCATCTACATGACGAGATGGAGGCTTCGGGGTGAAAATGACTACCCAATGGTACTTGAATATCGACCTCGAATTGACTTTGGCTAGATGATGAGCTGATGCTCCTGCACTACTTTCAGCCTATCAGCACACAGAACAGTGAATGGTCGTGCTACACAGTAGCGACTCAAACACACCAGTCtactttcttttacattttttttagcagttcCTCTCCAGGAGTTTTTACTCACTCTTCAGATTTCCCAGCACAGCAGGGACTGGAACTCTTGGTGCCCCGGATTGTTGGAAGGATGTTTGTTTGCCATGTGTGTGTCTCGCTCTGTTTGCTGGTCTAGCAGCAGAACTGTTGACGTACGTTTTCACGGGCCCAGGAGAGGAGTCTCCAACTCTTCAAGTGCATTCAGTCGTTATGTAAGTTGCTTGTATATCAGTAACTATTATAGTGCCTTTTCCACACATTGTGTTTCAGTGATGATAGTCACTGATCCCAGGAGCCTTGTTTCTGTACAGATAGGCCTGTGTAATCTGAATTCTGTTCATTGTGttcatataaaaatacacacagtgAAGTGTCTTATCAGCCCCAGTCTTCATCTGgtattattaaaataagctacttgtgtcaatttcatatttttattacatcCCTCGCTGCCTCGTACTGTACCTGACCCGTAAAGGACAGCAGTGTCTACAGTATCTACTGGGATTTGttccaatatgttttttttgttgtttttttttatgaagaagGAAGCTTTATTATCAGCAGTAGAGAAAGCATGCAGGCGTTCACTAGAGTGAAAGAAGGAATAGATTCATACGTTATACAACTGTTTAGAATTACCATCTGGAGTTTATATAGTTTAGCCAGTTACAGTAACTAGCAAAAGTATAGACAACacatttttgcactttttattaTGCAATTGCCTTTTTTTCTTACAGGTTTTAATTTTTCTGTGTTAAAAGCAAACAGATTCATTGGTCTTTCATGTTTGATCttgacctccacagttcccctgaacagTGTTCTGCACCGTAAAATCTTTCTTTAGTGGGAAAATACTGCTAGTCACTGCAGCTCCAAATAGACATtgtgaaattaaacaaaacattaattgTGGCATGTATAAGAAATATGacaactttattttttgtttgtttctaatCTGCTGAGAAAtctaatataatgtatatttaacaaCACATGTAATTAGACCAGGTTTGGGCACCCTTTACCAAATGACAatgactgttttcttttttccacaatttaaatttaaatgtaaaaccttcaaaaaacttcaaattaattacaattatacgataaaaatattatttaatattgataGCTAAAATACAAGAGTTTGGTGCAACTGTAGAAAATACATATCCATACATCTGTATTATACATGTGTAGTTTAgttttagcagtttttttttttaagccagaAGTTGCACTCATAGCTTTAGCATGCACCATTTGATACTGTTTGCAGCAGTAAAAACGAAGGTATACCCTTAAATGTTAAATCCATAATTAATTGGACTCTAAACTTTTGTCTGTGTTAAAGCAAACAAATTAATTAGTCTTTTTTAGATCTGATCctgacctccacagttcccctgaacagTGTTCTAAGCCGTAAAATCTTTCTCTAGCACTGGTACAATCTTTGAAGAGCCACAGAATTTATAAAACTTATGGAAATTTGATCAAACTGACGGTTCCTAACTAGAGTTAGGATAGAAATGCCTCTGACCCAATGTGCTAATCAAGGTCTGAGACCTTGTCTGTGAAATTGCACAGGgcacagtttatttttaaggctataaaatatggaaaaaaactacatttcccacatctcagtaaaaaaaaaaaagaaaaagacaaatgtGTCATTTAGCCAAGGGTGCCCAAATggtcatatacagctctgaacaaaaatgagaccacttaaaaatgatgagttcctctggaatataatcaagaggaagatag

Function

symbol description
pcgf5 Predicted to enable metal ion binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in Golgi apparatus; centrosome; and nucleoplasm. Part of PcG protein complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44554 True 5398 lncRNA 0.58 2 155652 166390
TU44555 False 862 TUCP 0.44 6 128385 145362
XM_022669406.1 False 2997 mRNA 0.41 8 128356 163508

Neighbor

gene id symbol gene type direction distance location
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 80793 42719 ~ 47563 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding downstream 290781 457171 ~ 483231 (+)
acbd4 LOC107662569 coding downstream 569438 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 586198 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 671915 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 714977 881367 ~ 881438 (+)
G33160 NA non-coding upstream 70168 57629 ~ 58188 (+)
G33147 NA non-coding upstream 89340 38493 ~ 39016 (+)
G33141 NA non-coding upstream 104494 21445 ~ 23862 (+)
G33211 NA non-coding downstream 104260 270650 ~ 306318 (+)
G33206 NA non-coding downstream 121642 288032 ~ 324053 (+)
G33231 NA non-coding downstream 195037 361427 ~ 362460 (+)
G33235 NA non-coding downstream 203275 369665 ~ 372776 (+)
G33246 NA non-coding downstream 229721 396111 ~ 401312 (+)
rpp30 rpp30 other upstream 27305 96303 ~ 101051 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other downstream 14679 181069 ~ 231917 (+)
LOC111192417 NA other downstream 252620 419010 ~ 424471 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 816777 983167 ~ 985381 (+)
trnal-aag NA other downstream 825922 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 1202783 1369173 ~ 1388019 (+)

Expression


Co-expression Network