G33206


Basic Information

Item Value
gene id G33206
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 288032 ~ 324053 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44592
CCATAGATAACCTTCAGACAGACAACCTTCCAGgctttaaaacaaacatacaaaaacccAACATATCAGGTGTGAACTGTAGTTTAAACAGCCTTTTTATACATTCAACATACATATTCCATCTCTGACATAAAAAGCAGCTAGCAGTAGTCCAACCATTTCCAAATCACATAATTTACATCCAAcagtttttttcctctttttctatTGGACGACAGTGCAGCAAACAAGCATGAGAAAGGCAAGAACAAAAGCTCATTCAACACACCGCTCTGCAGACTTCTGTATGGCTAAACTTAACTTACAATCACTCTCATTAAATAACATTCAACATCCCTCATTTCATCCTAAGTGCCAGTAGGGGTTTTCACATGCCATGGGCCTAGGCCTATGCAACAGTGGAGcgaaacactgacaaaataaaacacagcagcAAACATGGAGGAGAGGCAGCAAATAAACAGGACAGTGTATGTACAAAGTAgctttacaaaacaaaactgaaaagaTGTAGGAAAAATGtgcataaaaacagaaatgacAGGTAATGGCCAGCAGTATCTCATATGGGTTTATGATAATGCATCAGTTTCAAATATTGCTTCTGCTGGAAAGTGGGTCATCAATTGGTACCACAAAATATCTCAACTTCAATATGAAGCAACTTCCTGTCATACCAAATCATTTCCCACTTTCACATTCTTCGCTTTAAAGGCATCTTACACAGTGCAAAGTACCCCCTCCAAGTGAGCATTCACAATCACATTCCACAAGCAGGAGATGAACATCCCCTTATATTAATGCACAGTGTTCTGAGAGTAGCCATAGGGTGAAACTCGACTAATCCGGGCAATGTTGCTACACTGATTTTCAAGTTAACAAAAATAAGCATGaaaacagagaagaaaaaaagaaggaatcAATTGCACAAAAGTCTCATTTTAAGAGAAGAAATTTGCCCTTGCAACAGAtggtgttatttgtttatttattttagtaatttattcTCTTTCGAACAGCTAATGCCATTTAATCACAAACAATCTGACTAACAATCAGAGAATCACGAAGGAAGGCAATCTACGTTATAACAGTTACAGTTTCAAATCTAAGTGCTTTAGTGCACAGCATAGTTAGGAGCAATTATACCATTAAACCATTTATGTTTAGTTGAGCACCTGGCTATGTAACTTCTCACAATGGGTGTTAAaatccttatttatttattcatttttttaacataacctaaaaaagataaacaatTTTGAAATATGCAAATGAATCAGATCAGCAATACAGCCAATGGGTGTACAAATATTTTGAAGGGCTGAGGGTTCAATTTGAGTGACAAAACAatgtttttcaatgttttttaaccTTCAATTTCTAGACTATTATTGCTATATAACCGACAACTCTGAGAGGGACCCAGGGACCCaatttttatttagcatttaccCTTTTTATGGTTTTACCcaggggcgtagcagcaaattctgggccctgtacactgtcaatgtcagtgggcccctatccatgccagtacacaaggaac

Function

NR:

description
PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44592 True 1555 lncRNA 0.49 2 288032 324053

Neighbor

gene id symbol gene type direction distance location
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 240469 42719 ~ 47563 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding downstream 133118 457171 ~ 483231 (+)
acbd4 LOC107662569 coding downstream 411775 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 428535 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 514252 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 557314 881367 ~ 881438 (+)
G33160 NA non-coding upstream 229844 57629 ~ 58188 (+)
G33147 NA non-coding upstream 249016 38493 ~ 39016 (+)
G33141 NA non-coding upstream 264170 21445 ~ 23862 (+)
G33231 NA non-coding downstream 37374 361427 ~ 362460 (+)
G33235 NA non-coding downstream 45612 369665 ~ 372776 (+)
G33246 NA non-coding downstream 72058 396111 ~ 401312 (+)
G33256 NA non-coding downstream 161040 485093 ~ 485304 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding downstream 176424 500477 ~ 576299 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 56115 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 121642 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 186981 96303 ~ 101051 (+)
LOC111192417 NA other downstream 94957 419010 ~ 424471 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 659114 983167 ~ 985381 (+)
trnal-aag NA other downstream 668259 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 1045120 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1726689 2050742 ~ 2056963 (+)

Expression


Co-expression Network