G33235


Basic Information

Item Value
gene id G33235
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 369665 ~ 372776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44641
GTAGTGGTTGTAGGGGTTTCAAGTAGTTGTAGGGGTTTCAGTAGTTGTAAGTGGTTGTAGGGGtttcagtagtagtagtggttgtAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTTCAGtggttgtagtagttgtagggGTTTCAGTGGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTttcagtagttgtagtaGTTGTAGGGGTTTCAGTGGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGGGGTttcagtagttgtagtagttgtagggG
>TU44642
GTAGTGGTTGTAGGGGTTTCAAtggttgtagtagttgtagggAtttcagtggttgtagtagttgtaggggtttcagtagttgtagtagttgtaggggtttcagtagttgtaggggtttcagtggttgtagtagttgtagggGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTGGTTGTAGGGGTTTCAGTGGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGTGGTTGTAGGGGTTTCAGTAGTTGTAGGGGTttcagtagttgtagtagttgtagggG

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44641 False 405 lncRNA 0.46 2 369665 372776
TU44642 True 421 lncRNA 0.34 3 369665 372776

Neighbor

gene id symbol gene type direction distance location
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 322102 42719 ~ 47563 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding downstream 84395 457171 ~ 483231 (+)
acbd4 LOC107662569 coding downstream 363052 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 379812 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 465529 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 508591 881367 ~ 881438 (+)
G33231 NA non-coding upstream 7205 361427 ~ 362460 (+)
G33206 NA non-coding upstream 45612 288032 ~ 324053 (+)
G33211 NA non-coding upstream 63347 270650 ~ 306318 (+)
G33160 NA non-coding upstream 311477 57629 ~ 58188 (+)
G33147 NA non-coding upstream 330649 38493 ~ 39016 (+)
G33246 NA non-coding downstream 23335 396111 ~ 401312 (+)
G33256 NA non-coding downstream 112317 485093 ~ 485304 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding downstream 127701 500477 ~ 576299 (+)
LOC111192340 NA non-coding downstream 127707 500483 ~ 504588 (+)
LOC103046496 NA non-coding downstream 186785 559561 ~ 576144 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 137748 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 203275 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 268614 96303 ~ 101051 (+)
LOC111192417 NA other downstream 46234 419010 ~ 424471 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 610391 983167 ~ 985381 (+)
trnal-aag NA other downstream 619536 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 996397 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1677966 2050742 ~ 2056963 (+)

Expression


Co-expression Network