LOC111192417


Basic Information

Item Value
gene id LOC111192417
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 419010 ~ 424471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44681
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44685
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTT
>TU44686
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44687
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44688
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCGGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44689
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44690
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44691
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCGGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGT
>TU44695
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCCGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTG
>TU44700
CTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGT
>TU44712
GGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGT
>XM_022669427.1
TAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGACTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTATGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGGGGTTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGGGGGTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTTGAATCAGTAGAGGCTTCGGTAGTGGCTTCAGTTGTGTCAGTAGGGGCTAGAATAAAAATCTACAATTACAATCACCTAATGACACGCAAGATAAAACAAATTACCTAa

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04614 Renin-angiotensin system
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU44681 False 804 lncRNA 0.35 3 419010 424404
TU44685 False 427 lncRNA 0.47 2 419010 419961
TU44686 False 759 lncRNA 0.57 3 419010 424404
TU44687 False 759 lncRNA 0.36 3 419010 424404
TU44688 False 771 TUCP 0.38 7 419010 424404
TU44689 False 696 lncRNA 0.51 4 419010 424404
TU44690 False 666 lncRNA 0.48 3 419010 424404
TU44691 False 465 lncRNA 0.47 4 419010 421548
TU44695 False 458 lncRNA 0.44 3 419010 422602
TU44700 False 528 lncRNA 0.47 4 419010 424404
TU44712 False 231 lncRNA 0.41 3 422529 423389
XM_022669427.1 True 1229 mRNA 0.46 14 419457 424471

Neighbor

gene id symbol gene type direction distance location
htr7 htr7,LOC107758424,LOC107669182,LOC107594208,LOC107584235,LOC107753458,LOC107683721 coding upstream 371447 42719 ~ 47563 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding downstream 32700 457171 ~ 483231 (+)
acbd4 LOC107662569 coding downstream 311357 735828 ~ 745143 (+)
LOC103047415 LOC103469343 coding downstream 328117 752588 ~ 754996 (+)
LOC103022594 LOC108424886 coding downstream 413834 838305 ~ 850262 (+)
trnac-gca_9 NA coding downstream 456896 881367 ~ 881438 (+)
G33246 NA non-coding upstream 17698 396111 ~ 401312 (+)
G33235 NA non-coding upstream 46234 369665 ~ 372776 (+)
G33231 NA non-coding upstream 56550 361427 ~ 362460 (+)
G33206 NA non-coding upstream 94957 288032 ~ 324053 (+)
G33211 NA non-coding upstream 112692 270650 ~ 306318 (+)
G33256 NA non-coding downstream 60622 485093 ~ 485304 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding downstream 76006 500477 ~ 576299 (+)
LOC111192340 NA non-coding downstream 76012 500483 ~ 504588 (+)
LOC103046496 NA non-coding downstream 135090 559561 ~ 576144 (+)
G33320 NA non-coding downstream 142465 566936 ~ 568894 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 187093 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 252620 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 317959 96303 ~ 101051 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 558696 983167 ~ 985381 (+)
trnal-aag NA other downstream 567841 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 944702 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1626271 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 3139559 3564030 ~ 3659132 (+)

Expression


Co-expression Network