G33426


Basic Information

Item Value
gene id G33426
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 912388 ~ 921558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU44996
tgggccatagatgataattggctaggatgaccttgatagcttgtatggttctagagaaacagctatcgagcattggccccgccccctgggggggtgtatgtctacttaaactgacagggtatctgagaatcatgtaatgatcaaaggactgaagtggtattagtgtcaggttaagcattcaaaagttataagtgttaaagacattttactgcaccatggtagaactcatttgcatatggcggccatattgtttataaatgtaaagatttttttaataattattgaggagtaagctctgctgaactgtttgacaccaaacatgtcatgattggtcaaggatccaaggacaagatctcaaaagtaggttttgcatattatgcaaattaaaaaaaaaattaagtgggtggagcataaacaagaatgacccaggcggctgaccagcatgaacaagaaggataaatatgttcaattaagcaagacaagcaagattgaataagttcagcagagctttaatttagaataattcacctgtagctgtttcaccaaatgaccaccagagcgcagcaagagaccacatataacctgctggaaatctatcactctatcagaaagacagaacattccctatcagtgtgtttctatttattaaaaagagaagaaaagtccgattgggctccaaattggtactcatgatcaagtggtctgtatatacatgtatgtaaatttgtgtgttgatagggtcaaaggttcctgtcttctgtccatttaggttggaaaatagcgataaatagaataaattgaaaatagttattttttcactgtagagcctactgaagacttatttggctcatacttggcacatgtacttcaaatgtcattgttaattagtagcttcaacagttttggcatgttttaaactttgacagagttttggccaaataactctgaaaaggctttcacgtacatgtttgatcaaggtttatgggcctcaaatagttaaaatgtcaagatttttttgataattatttacctacagggtctcaagattgcatcaagaccaaatttgttttgattgattaaggacttaaagacaagttcgaaaagagcaatttttactcttttggccactgatgaaaatctttgcatttttggtaaacatatgtaattacaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcctgtcaaaagcttgctggaatctgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcctgtcaaaagcttgctggaatctgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcaacgccatattttaatggatgatagaaggccctgagatacatgtagggtataagtatcgtcctgattggtcattgtttagcctgtcaaaagcttgctggaatctgattggctaataacgatcgcaaaaatttgcatatcaaattttccttctgtaaaacattaggacataggccatagatgatacatgccaaaggagagcttcatagcttgtacggttcctgagaaacagatttttagctttggctccgccccctgggggcgtatgtctacacagattgacgggctacctcagaatcatgttggcatcaaagttgtaaaggctacagcaaagtatacaactaaaaaagaataacaagcctaggccacttgtacctttagatataactgattttctgctatagcgcccccttgaggccaatcgggctcatcttttgaatctgagtagcggtgagaagtactaccatatgaccaagtctcagccctgtaggccttacggtttcttctgcccaatcacttctatggcagaaaaagaataagaataataataataataataataataataataataataataataatcagaacaattacaatagggtttctagcactacgtgctcgaacccctaataataataataataataataataataataatcagaacaattacaatagggtttctagcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44996 True 2815 lncRNA 0.38 2 912388 921558

Neighbor

gene id symbol gene type direction distance location
trnac-gca_9 NA coding upstream 30950 881367 ~ 881438 (+)
LOC103022594 LOC108424886 coding upstream 62126 838305 ~ 850262 (+)
LOC103047415 LOC103469343 coding upstream 157392 752588 ~ 754996 (+)
acbd4 LOC107662569 coding upstream 167245 735828 ~ 745143 (+)
LOC103045384 si:dkey-100n10.2,LOC108424892,LOC107758432,LOC107584158,LOC107661094,LOC108273498,LOC107727700 coding upstream 429157 457171 ~ 483231 (+)
LOC103026642 LOC108424836 coding downstream 49078 970636 ~ 973482 (+)
LOC103037439 LOC108424843 coding downstream 193030 1114588 ~ 1120630 (+)
trnar-ucg NA coding downstream 199838 1121396 ~ 1121468 (+)
trnam-cau_18 NA coding downstream 200243 1121801 ~ 1121872 (+)
wdr45b wdr45b,LOC107598578 coding downstream 208397 1129955 ~ 1138168 (+)
G33329 NA non-coding upstream 300277 606044 ~ 612111 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding upstream 336089 500477 ~ 576299 (+)
G33454 NA non-coding downstream 67362 988920 ~ 991094 (+)
LOC111192341 NA non-coding downstream 117484 1039042 ~ 1046503 (+)
LOC111192399 NA non-coding downstream 263507 1185065 ~ 1221130 (+)
G33511 NA non-coding downstream 421852 1343410 ~ 1344921 (+)
LOC111192343 NA non-coding downstream 626117 1547675 ~ 1557290 (+)
LOC111192417 NA other upstream 487917 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 680471 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 745998 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 811337 96303 ~ 101051 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other downstream 61609 983167 ~ 985381 (+)
trnal-aag NA other downstream 70754 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 447615 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1129184 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2642472 3564030 ~ 3659132 (+)

Expression


Co-expression Network