LOC103023950 (LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190)


Basic Information

Item Value
gene id LOC103023950
gene name LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 983167 ~ 985381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45029
CAAAGTTAGGTTAGCTcattagctagcaagctaggtCACAAACCTCAAATACAGCAGTCATGTCGACGGCGATGAACTTTGGAAACAAGACTTTTAAACCTCGGCCGCCTGATAAAGGCTCTTTCCCCTTAGATCATTTCGGTGATTGTAAATCGTTTAAAGAGAAGTTCATGCGCTGCCTCAGCGACAACAACTTCGACAACTCGCTGTGTCGCATTCAGTCTAAAGAGTACCTGGAGTGTAGAATGGAGAGGCAGCTGATGGCCAAGGAGCCTTTGGAAAAGCTGGGCTTCAAGGATTTGATGGACCAGCCCCAGGCACAAAACAAGGAAGCAAACCCTTAgaaaaagctaattaaaaagATCATTGTCTTTCCACTGCATTAGGTTATTTAAATTGTAAACTTTATGTAAATGATGTACATATAAAAGTGT
>XM_007234085.3
GGAAACCGGCAGTGGCTAGCTTCACAAAGTTAGGTTAGCTcattagctagcaagctaggtCACAAACCTCAAATACAGCAGTCATGTCGACGGCGATGAACTTTGGAAACAAGACTTTTAAACCTCGGCCGCCTGATAAAGGCTCTTTCCCCTTAGATCATTTCGGTGATTGTAAATCGTTTAAAGAGAAGTTCATGCGCTGCCTCAGCGACAACAACTTCGACAACTCGCTGTGTCGCATTCAGTCTAAAGAGTACCTGGAGTGTAGAATGGAGAGGCAGCTGATGGCCAAGGAGCCTTTGGAAAAGCTGGGCTTCAAGGATTTGATGGACCAGCCCCAGGCACAAAACAAGGAAGCAAACCCTTAgaaaaagctaattaaaaagATCATTGTCTTTCCACTGCATTAGGTTATTTAAATTGTAAACTTTATGTAAATGATGTACATATAAAAGTGTTTGATATAA

Function

NR:

description
cytochrome c oxidase assembly protein COX19

GO: NA

KEGG:

id description
K18183 COX19; cytochrome c oxidase assembly protein subunit 19

RNA

RNA id representative length rna type GC content exon number start site end site
TU45029 False 434 TUCP 0.40 3 983191 985372
XM_007234085.3 True 467 mRNA 0.42 3 983167 985381

Neighbor

gene id symbol gene type direction distance location
LOC103026642 LOC108424836 coding upstream 9685 970636 ~ 973482 (+)
trnac-gca_9 NA coding upstream 101729 881367 ~ 881438 (+)
LOC103022594 LOC108424886 coding upstream 132905 838305 ~ 850262 (+)
LOC103047415 LOC103469343 coding upstream 228171 752588 ~ 754996 (+)
acbd4 LOC107662569 coding upstream 238024 735828 ~ 745143 (+)
LOC103037439 LOC108424843 coding downstream 129207 1114588 ~ 1120630 (+)
trnar-ucg NA coding downstream 136015 1121396 ~ 1121468 (+)
trnam-cau_18 NA coding downstream 136420 1121801 ~ 1121872 (+)
wdr45b wdr45b,LOC107598578 coding downstream 144574 1129955 ~ 1138168 (+)
foxk2 foxk2,LOC107719587 coding downstream 153058 1138439 ~ 1156171 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 38698 858648 ~ 944469 (+)
G33426 NA non-coding upstream 61609 912388 ~ 921558 (+)
G33329 NA non-coding upstream 371056 606044 ~ 612111 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding upstream 406868 500477 ~ 576299 (+)
LOC103046496 NA non-coding upstream 407023 559561 ~ 576144 (+)
G33454 NA non-coding downstream 3539 988920 ~ 991094 (+)
LOC111192341 NA non-coding downstream 53661 1039042 ~ 1046503 (+)
LOC111192399 NA non-coding downstream 199684 1185065 ~ 1221130 (+)
G33511 NA non-coding downstream 358029 1343410 ~ 1344921 (+)
LOC111192343 NA non-coding downstream 562294 1547675 ~ 1557290 (+)
LOC111192417 NA other upstream 558696 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 751250 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 816777 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 882116 96303 ~ 101051 (+)
trnal-aag NA other downstream 6931 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 383792 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1065361 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2578649 3564030 ~ 3659132 (+)
G34309 NA other downstream 3185670 4171051 ~ 4178083 (+)

Expression


Co-expression Network