G33454


Basic Information

Item Value
gene id G33454
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 988920 ~ 991094 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45036
GCAAGAGTAAAAGATCAAAgtgattttaatataaaaagaaatcatAACATACTTAGATCGGGAGTGTCGCCGGTTGTCATGTCGACGCCGGCTGGGACTGGGAGAGCCAGATGAGCTTGAGGAACTAGAGGAGCGTGAGCTGGAGGAGCCAGAGCGGCTGGAAGCAGAGGATGAACTGGAGCCACTCGATGAGCCAGAGCTGGAACCAGaactgctgctggagctggagCTACTGCTGCCACTAGATGCGTTCCGTCGTTTGCGGGCCTTCTCTCTGCCCCTCTCCTTTTCAGCATTCTCTTTAACTCCTGCTTTGTCCTTCCCTCGTTCTTTTGGTTTTTCCTCAGAGCGGTCCTTTCTCTTGGTTGGAGATGGAGCCCTGTAACAGAAGGACATATTGAGAGAGTTCAATTAAAATTCAGCTGCCAATACAGCTCCATCTGTTCATGCACAAACAAATGATTTGTTATATATTAGACAAACCAAAGAAGTAATAATTATTTGGAGGAACCGCAGTAACACTGTatcaactgttaagcatggtggtggaagcagCATGCTGCGGATCTCCTTTACTGCCAGTATGATTGGTGCATTGTACCTCTATCCATTAGCTAGACAATAGAA
>TU45037
GCAAGAGTAAAAGATCAAAgtgattttaatataaaaagaaatcatAACATACTTAGATCGGGAGTGTCGCCGGTTGTCATGTCGACGCCGGCTGGGACTGGGAGAGCCAGATGAGCTTGAGGAACTAGAGGAGCGTGAGCTGGAGGAGCCAGAGCGGCTGGAAGCAGAGGATGAACTGGAGCCACTCGATGAGCCAGAGCTGGAACCAGaactgctgctggagctggagCTACTGCTGCCACTAGATGCGTTCCGTCGTTTGCGGGCCTTCTCTCTGCCCCTCTCCTTTTCAGCATTCTCTTTAACTCCTGCTTTGTCCTTCCCTCGTTCTTTTGGTTTTTCCTCAGAGCGGTCCTTTCTCTTGGTTGGAGATGGAGCCATTTTTACCCGTTTTTATCGCTCGTCGCACTTTACATGACGTATCACAACACGGCCCCCCCAACGTACGTCATGGCAGAAGAGGTATCGGTCCCCAAAGATAAAAGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45036 True 627 lncRNA 0.49 2 988920 989676
TU45037 False 489 lncRNA 0.33 3 988920 991094

Neighbor

gene id symbol gene type direction distance location
LOC103026642 LOC108424836 coding upstream 15438 970636 ~ 973482 (+)
trnac-gca_9 NA coding upstream 107482 881367 ~ 881438 (+)
LOC103022594 LOC108424886 coding upstream 138658 838305 ~ 850262 (+)
LOC103047415 LOC103469343 coding upstream 233924 752588 ~ 754996 (+)
acbd4 LOC107662569 coding upstream 243777 735828 ~ 745143 (+)
LOC103037439 LOC108424843 coding downstream 123494 1114588 ~ 1120630 (+)
trnar-ucg NA coding downstream 130302 1121396 ~ 1121468 (+)
trnam-cau_18 NA coding downstream 130707 1121801 ~ 1121872 (+)
wdr45b wdr45b,LOC107598578 coding downstream 138861 1129955 ~ 1138168 (+)
foxk2 foxk2,LOC107719587 coding downstream 147345 1138439 ~ 1156171 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 44451 858648 ~ 944469 (+)
G33426 NA non-coding upstream 67362 912388 ~ 921558 (+)
G33329 NA non-coding upstream 376809 606044 ~ 612111 (+)
G33312 si:dkeyp-94b4.1,LOC108424890,LOC107758427,LOC107675649 non-coding upstream 412621 500477 ~ 576299 (+)
LOC111192341 NA non-coding downstream 47948 1039042 ~ 1046503 (+)
LOC111192399 NA non-coding downstream 193971 1185065 ~ 1221130 (+)
G33511 NA non-coding downstream 352316 1343410 ~ 1344921 (+)
LOC111192343 NA non-coding downstream 556581 1547675 ~ 1557290 (+)
G33609 NA non-coding downstream 737027 1728121 ~ 1731958 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 3539 983167 ~ 985381 (+)
LOC111192417 NA other upstream 564449 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 757003 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 822530 128356 ~ 166390 (+)
rpp30 rpp30 other upstream 887869 96303 ~ 101051 (+)
trnal-aag NA other downstream 1218 992312 ~ 992518 (+)
LOC111192342 dnah9 other downstream 378079 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 1059648 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2572936 3564030 ~ 3659132 (+)
G34309 NA other downstream 3179957 4171051 ~ 4178083 (+)

Expression


Co-expression Network