LOC111192399


Basic Information

Item Value
gene id LOC111192399
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1185065 ~ 1221130 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45100
GTCAGAGGGACCGCGTATGAATCTCTGAGCCCTGGAACAGCACGCGCCTGTGGCAGCAATAAACAGACGGAGtggttgtgtggagaaaaaCAACAGATTTGGTGCCCTCGTTTTGGATCACCTGAACCCCCCCTGCACCAGCGATTTCCCCTTAGCCCACTCAAGGCTACAAAGCTGGGTGGCCCGCGTGCTGCCAGTCCCTAAGGGACACAGGTGCTGACACAGTGCTAGCAGTCACTGACCTGGACCAAGAAAGGCCAGAGGATGGAGATGAGGGAGGGAACAAGTGGCTCAGAAATAGCTAACATGCTTGACAAGGGACAAGATGTCTAATATGTTTCCAGTCTGCTCCCCGGCTCCGCCGCTCCCACGCCTGCTGGAGAAAGCAGTGTGATGGAATTCTAAGCACTCCAAAACACTCCTGCGAGTATAGTTTATTGCCGGCGTACTGCTCCAGGACAGGCTGGAAATCATTATTTACTCCTCAAGGCCATTCCACAAGATTGAGCTTTAGAGGTTTAGGTATTTGTTCATATTACGTTTTCTGTATGCCTGTGTAGTGAGCCCCCAACCCCCCCTCACCTCCCTCGCAACTTGTTGTCACCCCTGGTTTTATTTGCTGTGGGAGTTGTAAAGCACTGAATGTCAGTTGATATCTTTCACTATAGCATGCCATGACttttcctgcggagactgatgGAGCGAGTCAGTGATGCTCAGCTCAAAGTTGCTTCGTCCTTTAACCTCTTAAACTGCAgactaataaaaatgaatgctcCTAACTCATTCAAGAAAATTTACTTTATGTGGAGCGTcttcatatttttaaatggttcttcAATTTCACACATAAGTTTGCATCACTACAAAGAACCCTTGGTACCATTAGTTTCATTGCACTGTAAGCTTTTAATTTATCAAATAATTGTAAGATATACTATTCAATAACTATTA
>XR_002649899.1
TGAATCTCTGAGCCCTGGAACAGCACGCGCCTGTGGCAGCAATAAACAGACGGAGtggttgtgtggagaaaaaCAACAGATTTGGTGCCCTCGTTTTGGATCACCTGAACCCCCCCTGCACCAGCGATTTCCCCTTAGCCCACTCAAGGCTACAAAGCTGGGTGGCCCGCGTGCTGCCAGTCCCTAAGGGACACAGGTGCTGACACAGTGCTAGCAGTCACTGACCTGGACCAAGAAAGGCCAGAGGATGGAGATGAGGGAGGGAACAAGTGGCTCAGAAATAGCTAACATGCTTGACAAGGGACAAGATGTCTAATATGTTTCCAGTCTGCTCCCCGGCTCCGCCGCTCCCACGCCTGCTGGAGAAAGCAGTGTGATGGAATTCTAAGCACTCCAAAACACTCCTGCGAGTATAGTTTATTGCCGGCGTACTGCTCCAGGACAGGCTGGAAATCATTATTTACTCCTCAAGGCCATTCCACAAGATTGAGCTTTAGAGGTTTAGGTATTTGTTCATATTACGTTTTCTGTATGCCTGTGTAGTGAGCCCCCAACCCCCCCTCACCTCCCTCGCAACTTGTTGTCACCCCTGGTTTTATTTGCTGTGGGAGTTGTAAAGCACTGAATGTCAGTTGATATCTTTCACTATAGCATGCCATGACttttcctgcggagactgatgGAGCGAGTCAGTGATGCTCAGCTCAAAGTTGCTTCGTCCTTTAACCTCTTAAACTGCAgactaataaaaatgaatgctcCTAACTCATTCAAGAAAATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45100 True 954 lncRNA 0.46 4 1185065 1221130
XR_002649899.1 False 783 lncRNA 0.49 4 1185082 1220976

Neighbor

gene id symbol gene type direction distance location
foxk2 foxk2,LOC107719587 coding upstream 28894 1138439 ~ 1156171 (+)
wdr45b wdr45b,LOC107598578 coding upstream 46897 1129955 ~ 1138168 (+)
trnam-cau_18 NA coding upstream 63193 1121801 ~ 1121872 (+)
trnar-ucg NA coding upstream 63597 1121396 ~ 1121468 (+)
LOC103037439 LOC108424843 coding upstream 64435 1114588 ~ 1120630 (+)
LOC103039538 LOC108424875 coding downstream 39520 1260650 ~ 1366518 (+)
myocd myocd coding downstream 377810 1598940 ~ 1721902 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 538478 1759608 ~ 1782752 (+)
LOC111192346 gas7 coding downstream 563308 1784438 ~ 1799673 (+)
LOC103043879 NA coding downstream 585881 1807011 ~ 1814314 (+)
LOC111192341 NA non-coding upstream 138562 1039042 ~ 1046503 (+)
G33454 NA non-coding upstream 193971 988920 ~ 991094 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 240596 858648 ~ 944469 (+)
G33426 NA non-coding upstream 263507 912388 ~ 921558 (+)
G33329 NA non-coding upstream 572954 606044 ~ 612111 (+)
G33511 NA non-coding downstream 122280 1343410 ~ 1344921 (+)
LOC111192343 NA non-coding downstream 326545 1547675 ~ 1557290 (+)
G33609 NA non-coding downstream 506991 1728121 ~ 1731958 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding downstream 511796 1732926 ~ 1735977 (+)
G33623 NA non-coding downstream 647800 1868930 ~ 1871903 (+)
trnal-aag NA other upstream 192547 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 199684 983167 ~ 985381 (+)
LOC111192417 NA other upstream 760594 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 953148 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 1018675 128356 ~ 166390 (+)
LOC111192342 dnah9 other downstream 148043 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 829612 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2342900 3564030 ~ 3659132 (+)
G34309 NA other downstream 2949921 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3661426 4882556 ~ 4924766 (+)

Expression


Co-expression Network