G33511


Basic Information

Item Value
gene id G33511
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1343410 ~ 1344921 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45114
CATGTCATTCTAACATTGTCTTCCCTACACTTATATCCAAGGCTGTTCACTGACTAACGTCAATGCAGTATTGAATCCACCtacacactctttctctataACCTTGAATTGCATCAGTAATATTATTCAAGGTAACCCTGCACTACTTTACCCTGAAAGAGAGATACGATACAACCAACTAAACACACAGATAAGcaaaatatgctttttaaatgttcatttgaaatgtttttttaaagtgcatGAGGAAGGCTAAATtgttagaataataataataataataataactcacATGCATTTGTAAACAGTTACGCCAGCAGTCACCCCCCCCAAGAGCGTGGTGTAGGGTCCACGCCAGAATGCAGACATTTATCACCGGCTCTTAACAGGGCCGTCATTGCCAGCTCAGAATAGCTGCCATTCATCATGGCTCACCACACAGTGGAGTGAATGCTCAAGCCTGGCGCTATTCCTTGATGGCCTCTGCAGAAGTCACACACTGCACTACCGTAGCCTGATCACTCGCTCATTACAAGCCAATCTGTTGCTGACTGCATCTGCCTCCTGCGgcgcgcacacacatacacacacacacacaagcttctACTCACAGATGCAGTCCAGTCCATATGCAAACACACAGGCATTTTGACAGGTGACAGAACAAAGGCAGCTACCTTTAGTTAGGAAACTGTGCTGTAAACCATGGCAGTTCTTTTCCTATACACCATACAGTCTTCTTTACATACGATACAAGCTATAGAGGGGTAAGATACTTATGTAAGCTGTGTTAACTTGAGTTGAGATgtactgctgagataaatgtatgactacaattgcaatgctgaggtaaatttatgattaaaatagtacTGCTGTGGTAAATCTATGACTTTTTCACTGcttaggtaaatgtatgactgttTGACTACTGAGATAAATGAATGActattgcactgctgaggtaaatgtatgactgttgcactgctgaggtaaaatgaTGACAATttcactgctgagttaaatagATGActattgcactgctgaggtaaatgtatgactatttgactactgaggtaaatgtatgactattgcactgctgagttaaatgtatgactatttgaatactgaggtaaatgtatgactattgcactgctgaggtaaatgtatgatattagaatactgaggtaaatgtatgactattTCACCGCTGAGGTAAACGTATGGCTATTGGACTATTAATCTTTGACTATGTCACAGTTGGGTTAATCTTTGACTATGTCACAGTTGGgtaaatctttgACTATGTTACTGTTGAGTTAAATCTTTGACTGTGACACAGTTGGGTAAATCTTTGACTTTTttctctgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45114 True 1372 lncRNA 0.45 3 1343410 1344921

Neighbor

gene id symbol gene type direction distance location
foxk2 foxk2,LOC107719587 coding upstream 187239 1138439 ~ 1156171 (+)
wdr45b wdr45b,LOC107598578 coding upstream 205242 1129955 ~ 1138168 (+)
trnam-cau_18 NA coding upstream 221538 1121801 ~ 1121872 (+)
trnar-ucg NA coding upstream 221942 1121396 ~ 1121468 (+)
LOC103037439 LOC108424843 coding upstream 222780 1114588 ~ 1120630 (+)
myocd myocd coding downstream 254019 1598940 ~ 1721902 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 414687 1759608 ~ 1782752 (+)
LOC111192346 gas7 coding downstream 439517 1784438 ~ 1799673 (+)
LOC103043879 NA coding downstream 462090 1807011 ~ 1814314 (+)
LOC103042228 chadl,LOC108413512 coding downstream 471317 1816238 ~ 1827981 (+)
LOC111192399 NA non-coding upstream 122280 1185065 ~ 1221130 (+)
LOC111192341 NA non-coding upstream 296907 1039042 ~ 1046503 (+)
G33454 NA non-coding upstream 352316 988920 ~ 991094 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 398941 858648 ~ 944469 (+)
G33426 NA non-coding upstream 421852 912388 ~ 921558 (+)
LOC111192343 NA non-coding downstream 202754 1547675 ~ 1557290 (+)
G33609 NA non-coding downstream 383200 1728121 ~ 1731958 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding downstream 388005 1732926 ~ 1735977 (+)
G33623 NA non-coding downstream 524009 1868930 ~ 1871903 (+)
G33737 NA non-coding downstream 683412 2028333 ~ 2030101 (+)
trnal-aag NA other upstream 350892 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 358029 983167 ~ 985381 (+)
LOC111192417 NA other upstream 918939 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1111493 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 1177020 128356 ~ 166390 (+)
LOC111192342 dnah9 other downstream 24252 1369173 ~ 1388019 (+)
amz2 amz2 other downstream 705821 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2219109 3564030 ~ 3659132 (+)
G34309 NA other downstream 2826130 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3537635 4882556 ~ 4924766 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G203943 NA non-coding CI01000047 null 7355166 ~ 7368728 (-)