LOC111192342 (dnah9)


Basic Information

Item Value
gene id LOC111192342
gene name dnah9
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1369173 ~ 1388019 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45181
CGGGAAACACATACAGCTGGCCTGACTCACACTGCACTGTACTTCAGAGCGCGTTTTTGTGGCTAAAAAGTGAGAAATTAAGCAGTAAACGAGTTAAAAAGTAACTGAAGGAACTTTTTGAAGGAGCACGTTATTGTTTTTGCTCAGTGGACTAATTTCGGACCCTCACCGGAGCACGAGGACGCCGCAGCTGATTAGAACCGGAGCAGGGCCACGCCCGCCAGTGTCCATTTGGATGGATTCTCTTTGGTCTTCAGGTTGAACGTCCACACGTATGTGGGCCCCCTCTGTCTGGTCTTGTAGACGGGACACTGATACACGTTCCGCGTCTCCTGCTTGTCAACAGAGGGACATGGCAACAGTGGAGGAACATGCTCTCCAGATGCTCTACGAGGATCGGAAGAGGACTGATGCCAGGATCATTGTCTCCGGCCCCATTCCCACCTAGCGCTACAGGAGCGAGCTGGACGTCGCACTGCAGGCTCATCTTATCCAGGGGCCACTCGTTGCGGCGGGCTGTGGACTGCATGATGGCGGTCAGGAAGGACTGTGGGTTGAAGAAGCCGGCCAACCAGACGGCCGGGGGCAGGTTGAAGTCTGAGCTCCAGCTCTCCAGCTCACGGATTCGGTTCAGCAGGTCGGTGAACCACAGCGCCAGACCGCACATGGACGGGTATGCCCGCTTCGTCCAAGAGTCCGGTACCTGATCCAGTACCTTCAGGCCCAAATTGAGCTCTTTAAGAGAGCGTTTGATCTCCTGTGTGAGAATGTTCATACGCTCACACTCCTGCAGGGCCACCACTACATATGGACTCCTCTCCTCCACTTTCCCCATCAGCTCCACCATGTTAAACTCCTCTGGAAGCTTCTCCAGGGTCTCTTCCAGAACCGCTTTCaccttaaacacacaaatatatcaGTGAACATGGATCCTAAACATCATTTACACAGTGGAAAGTATAAGTTAAGTGAgaactgttccttactattgatTCAGGTACTGGGAAACTTATTGAAGCTAGATATTCATTTTGGATTGTAAAACTAATCTGTCAAAATATGATGGGAAAAACACAATATTCTGGTAGCATGTTAGCTCAAGGCTCATAAACATTTTCAGGATTGGATCATTTCTTGGCCCTTGGAGATGGGAGATTTACATTTAAAGCTTGTAATAGAAATGTTTGTTTTCACGAAGTATCTTTGCTTTAATAGGACAAACCACCACATcttcaaatgaaaaatattaaagcaTGACTACAAAATGTGAGAATTATATGAGAATAAGGCCATTctacaatattatattaaaatatagccTTTTTGTTATcatgatttttgttttctttaatgaaACCCTAATCTCTGAAAACAAAAGAATTCTCTGGCAGGTGCAGAGGCAAAACAATGTGACCAACACTGTAAATTTGTCTCACCAGCTGCTGTAATCACAGCTATGTGTTGAGTACCTTGTTCTCATCTGCTTGTGAGGTAGCTAGCAGTAGGTTGTAGCCAGCTCTCTCAGAGACAATATATACCAAAGACTATTATAAATTGAATCAACTGTACATACTGTTAACAAAACACAGttcatatataatttatatataatgttttttttttttttcgttttttttttttttacagtagccATACCAAGCTAGAACAGTACTGAGCCAAACACTACAAACTGTGCATAAagatttatcagattttatcatTTTGATTTTGAATTTTGGGGTTTGGTGGCATGTCTCGTATGACATTGGGTAACTGTCTGGTCACATTGTAAAGAGGCCACCTAAAGACTTTTGCTATACCAACCAGTTTTTTCATTACGTTAGCTATATTAGCCTCTCAATGCTCTTAAGAAGCAGCAAATTTCTCCATTCTCCATTGACTGATCCGATATGTTTAGGATAAAGTGTAAACGTACTGTTCTCATAAACACTCTCCTGTTAGGCACTCTAGAAACACACTTCCTCTTAAATGTCCCCTAAAAACAGTTGAACTTTACACAATCATGAACTCCACAGAGACAAAACACTACAAGGGCGAAGTCCACGTAATCAATATcccgcagaaaaaaaaaatatctatttgtCTCGGTCACTTACATGACCAGCGTAATGCAAAGTGGTCATTGCTTACAAATCCCAATCTCTTAACTGAAAAAGGTCAGCTGTCATAATGCTTCCAGGCACACTTCCACAGCTCCCATATCTAATCTCTGAAATGTCAGATCCACCCAGCCCAACCCGCTGCTGTGGAATTAGCTCCATTTAACCTCTTCAGACACAAGTGGGCCTTCCAGTCTCAGGCTTAGGATCTGACAGTGTGATTAGGCTGACCCTTTTAAAAGCAGCCACAGTGAAGGACGATATAGGGATCGAGTTCACGTCTATTCTGTCCGATGATGAGGGTAATGGGGCTAAATAGAGGCCCTGACATACAGTGATGATGATGTATTATGAGTAATGGTTGATAATAGGTAGGGAACGCAATCAGGAAATGAGATGGAAGGAAATGACTGCTGAACTGTGTTGTGGTGAGGTGTGCTGATTAATTCCTACTATTTACTatgtgtgtttacctgtgttctGGATAAGGTTCAAGCAAACATTCTTCCAAAAAagcccaaaaataaataaaaattgaaaatgaTTTGGATTAGCTGTAGATGTAGGACTGGTTCAGTAgggacatttatttatttacagtcctTTATAAGATCACCACAAGGTTCCaggacttttattattaaaagattCTCAATATCATCTATTTCCATATACCTAGTTACTCAGTGTACTATTAAACATCTTTCTGTAAAGccct
>TU45182
CGGGAAACACATACAGCTGGCCTGACTCACACTGCACTGTACTTCAGAGCGCGTTTTTGTGGCTAAAAAGTGAGAAATTAAGCAGTAAACGAGTTAAAAAGTAACTGAAGGAACTTTTTGAAGGAGCACGTTATTGTTTTTGCTCAGTGGACTAATTTCGGACCCTCACCGGAGCACGAGGACGCCGCAGCTGATTAGAACCGGAGCAGGGCCACGCCCGCCAGTGTCCATTTGGATGGATTCTCTTTGGTCTTCAGGTTGAACGTCCACACGTATGTGGGCCCCCTCTGTCTGGTCTTGTAGACGGGACACTGATACACGTTCCGCGTCTCCTGCTTGTCAACAGAGGGACATGGCAACAGTGGAGGAACATGCTCTCCAGATGCTCTACGAGGATCGGAAGAGGACTGATGCCAGGATCATTGTCTCCGGCCCCATTCCCACCTAGCGCTACAGGAGCGAGCTGGTTAGTCGCCTTTTTGCACTGAATTGCTGGCTGCAGGATTGGTGCAGCATCGTCAGGGTGGAAAACGTGGACCATTGGGAGAGCTTTTGGGAGTGACCGGCCCTCTAAGATTTTactaccaattttttttttttttaccatattagaACTGGCTCTCTATATAGTGCACTGCATTAATCTGAAACGTAGTTACAGTCAAAGTTGTGCAGCatagaacagaaaataatttattctaTATTAGATATGTTGTTGCGGTAATGCAAAACTTTATCTGTATACTTTTGCAATGTAAAACTGGCAGCAGTCCAACTTAAATAATAGGCTGACAGGATTACTTCAAACtaactgaataataactcaAGTACTTTTccagtgtaaaaatataaaaaatatatactttaacctaaagtctaaatgtttttttttttcgtgactTTTGGAGGTACAAGGTTTTTGCACAGATGTGACAAAATAATACACTGGATGTctcaaaaattacattttgagtttCATTGTACTGCAGTTCAGCGTAAAGCTAGGGATGGATGGgtttaaactaattattaatatatttgttaacAAATATAGCAGTTTTAATTCAGTCAAGTTAAGAAGACTTTTTC
>XR_002649836.1
ATGCGGTGATCACGTGATACTCACAGGGGCGGGAAACACATACAGCTGGCCTGACTCACACTGCACTGTACTTCAGAGCGCGTTTTTGTGGCTAAAAAGTGAGAAATTAAGCAGTAAACGAGTTAAAAAGTAACTGAAGGAACTTTTTGAAGGAGCACGTTATTGTTTTTGCTCAGTGGACTAATTTCGGACCCTCACCGGAGCACGAGGACGCCGCAGCTGATTAGAACCGGAGCAGGGCCACGCCCGCCAGTGTCCATTTGGATGGATTCTCTTTGGTCTTCAGGTTGAACGTCCACACGTATGTGGGCCCCCTCTGTCTGGTCTTGTAGACGGGACACTGATACACGTTCCGCGTCTCCTGCTTGTCAACAGAGGGACATGGCAACAGTGGAGGAACATGCTCTCCAGATGCTCTACGAGGATCGGAAGAGGACTGATGCCAGGATCATTGTCTCCGGCCCCATTCCCACCTAGCGCTACAGGAGCGAGCTGGACGTCGCACTGCAGGCTCATCTTATCCAGGGGCCACTCGTTGCGGCGGGCTGTGGACTGCATGATGGCGGTCAGGAAGGACTGTGGG

Function

symbol description
dnah9 Predicted to enable minus-end-directed microtubule motor activity. Acts upstream of or within epithelial cilium movement involved in determination of left/right asymmetry. Is expressed in several structures, including mesoderm; nervous system; neural tube; pleuroperitoneal region; and tail bud. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 40. Orthologous to human DNAH9 (dynein axonemal heavy chain 9).

NR:

description
PREDICTED: dynein heavy chain 9, axonemal

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45181 True 2838 TUCP 0.42 5 1369202 1388019
TU45182 False 1089 lncRNA 0.35 3 1369202 1383801
XR_002649836.1 False 583 lncRNA 0.54 4 1369173 1384218

Neighbor

gene id symbol gene type direction distance location
LOC103039538 LOC108424875 coding upstream 2655 1260650 ~ 1366518 (+)
foxk2 foxk2,LOC107719587 coding upstream 213002 1138439 ~ 1156171 (+)
wdr45b wdr45b,LOC107598578 coding upstream 231005 1129955 ~ 1138168 (+)
trnam-cau_18 NA coding upstream 247301 1121801 ~ 1121872 (+)
trnar-ucg NA coding upstream 247705 1121396 ~ 1121468 (+)
myocd myocd coding downstream 210921 1598940 ~ 1721902 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 371589 1759608 ~ 1782752 (+)
LOC111192346 gas7 coding downstream 396419 1784438 ~ 1799673 (+)
LOC103043879 NA coding downstream 418992 1807011 ~ 1814314 (+)
LOC103042228 chadl,LOC108413512 coding downstream 428219 1816238 ~ 1827981 (+)
G33511 NA non-coding upstream 24252 1343410 ~ 1344921 (+)
LOC111192399 NA non-coding upstream 148043 1185065 ~ 1221130 (+)
LOC111192341 NA non-coding upstream 322670 1039042 ~ 1046503 (+)
G33454 NA non-coding upstream 378079 988920 ~ 991094 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 424704 858648 ~ 944469 (+)
LOC111192343 NA non-coding downstream 159656 1547675 ~ 1557290 (+)
G33609 NA non-coding downstream 340102 1728121 ~ 1731958 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding downstream 344907 1732926 ~ 1735977 (+)
G33623 NA non-coding downstream 480911 1868930 ~ 1871903 (+)
G33737 NA non-coding downstream 640314 2028333 ~ 2030101 (+)
trnal-aag NA other upstream 376655 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 383792 983167 ~ 985381 (+)
LOC111192417 NA other upstream 944702 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1137256 181069 ~ 231917 (+)
LOC103039306 pcgf5,LOC108410714,LOC106589380 other upstream 1202783 128356 ~ 166390 (+)
amz2 amz2 other downstream 662723 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2176011 3564030 ~ 3659132 (+)
G34309 NA other downstream 2783032 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3494537 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 4304503 5692522 ~ 5756116 (+)

Expression


Co-expression Network