LOC111192343


Basic Information

Item Value
gene id LOC111192343
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1547675 ~ 1557290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45232
CACAGTAATCTTATCATTACACCTCAATCTCAGGTGCGACAGCACCTGTGTTAGGACTTGAGTTTGAATCTGTTTTGGAACCTATGTTCGGACCTGTTGGACCTGTGTTTGGACTTGTGTTCGGACCTGTATTTAGACCTGAGTTTGGGCCTGTGTTTAGACCTGAGTTCGAGCCTGTGTTTAGACCTGAGTTCGGGCCTGTGTTAAGACCTGTGTTTAGACCTGTGTTTGTACCTGTTTTTATGGAGGTGAAAGGCATGAAGGAAGCTTTGGAgcggaaaagagaaaaaaaagtgtccgAGAGATGGAGCTCGCGCGTTGTTTGCAGTTCAAAGAGGGACGTGACCTCTGGCTGAGCATGGAAGGCCGCGGTTCTAGGGAGCGTGCAGGCGGTTCAGGAACCGAGGAGATTCGGGCCTTGGCTTTGAAGATTAGCATGACAGACCAAAGGCAGCCATCGAGGTCAGTCTTTCCATTTGCAAATCAAAGCCATCCTGCCACAGTGATGGGAGCGTGCTGTTAGTAACGTCTCGCGGGGTGGCTATCCGGAAGCTTACATCTGTCTCCAGCATTGAAGTTATTTACATGATATGATACCAATTTTTG
>XR_002649837.1
TGAGGTTCTGGAGCTGCTCTCCGAGGACTGGGAGAAGTTAATGGGAGAAGTTGTGAGTGACTCGTTGTCCTCGCTGGTCTCCACGGTGAAAGGCATGAAGGAAGCTTTGGAgcggaaaagagaaaaaaaagtgtccgAGAGATGGAGCTCGCGCGTTGTTTGCAGTTCAAAGAGGGACGTGACCTCTGGCTGAGCATGGAAGGCCGCGGTTCTAGGGAGCGTGCAGGCGGTTCAGGAACCGAGGAGATTCGGGCCTTGGCTTTGAAGATTAGCATGACAGACCAAAGGCAGCCATCGAGACCATGCTTGAGGCCAGTAGGGCTGAAGCGTGCCATTACTTTCTACAGGGTCTATAAAGgataatgctcatcaTCAGTACTCCACACCTACTGCACAATCTGCAGAAATGTTCAAGCTGCATTGGATGAATTatcgcaggacaccattaggaacctcaaCAACTCCATGGCAAGACATCTGGCATCTTATTTTACACAAGAATAA
>XR_002649838.1
TGAGGTTCTGGAGCTGCTCTCCGAGGACTGGGAGAAGTTAATGGGAGAAGTTGTGAGTGACTCGTTGTCCTCGCTGGTCTCCACGGTGAAAGGCATGAAGGAAGCTTTGGAgcggaaaagagaaaaaaaagtgtccgAGAGATGGAGCTCGCGCGTTGTTTGCAGGTTCTGAATTCCCAGGGTCCACTACCAATCAGGGTGTTCCACTCTATCAAGCAGACTTCAAAGAGGGACGTGACCTCTGGCTGAGCATGGAAGGCCGCGGTTCTAGGGAGCGTGCAGGCGGTTCAGGAACCGAGGAGATTCGGGCCTTGGCTTTGAAGATTAGCATGACAGACCAAAGGCAGCCATCGAGACCATGCTTGAGGCCAGTAGGGCTGAAGCGTGCCATTACTTTCTACAGGGTCTATAAAGgataatgctcatcaTCAGTACTCCACACCTACTGCACAATCTGCAGAAATGTTCAAGCTGCATTGGATGAATTatcgcaggacaccattaggaacctcaaCAACTCCATGGCAAGACATCTGGCATCTTATTTTACACAAGAATAA

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU45232 True 606 lncRNA 0.36 2 1549109 1551147
XR_002649837.1 False 504 lncRNA 0.50 5 1547675 1557290
XR_002649838.1 False 560 lncRNA 0.50 6 1547675 1557290

Neighbor

gene id symbol gene type direction distance location
LOC103039538 LOC108424875 coding upstream 181157 1260650 ~ 1366518 (+)
foxk2 foxk2,LOC107719587 coding upstream 391504 1138439 ~ 1156171 (+)
wdr45b wdr45b,LOC107598578 coding upstream 409507 1129955 ~ 1138168 (+)
trnam-cau_18 NA coding upstream 425803 1121801 ~ 1121872 (+)
trnar-ucg NA coding upstream 426207 1121396 ~ 1121468 (+)
myocd myocd coding downstream 41650 1598940 ~ 1721902 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 202318 1759608 ~ 1782752 (+)
LOC111192346 gas7 coding downstream 227148 1784438 ~ 1799673 (+)
LOC103043879 NA coding downstream 249721 1807011 ~ 1814314 (+)
LOC103042228 chadl,LOC108413512 coding downstream 258948 1816238 ~ 1827981 (+)
G33511 NA non-coding upstream 202754 1343410 ~ 1344921 (+)
LOC111192399 NA non-coding upstream 326545 1185065 ~ 1221130 (+)
LOC111192341 NA non-coding upstream 501172 1039042 ~ 1046503 (+)
G33454 NA non-coding upstream 556581 988920 ~ 991094 (+)
G33413 lasp1,LOC108424884,LOC108274031,LOC105905439,LOC108258608,LOC107567378,LOC107745925 non-coding upstream 603206 858648 ~ 944469 (+)
G33609 NA non-coding downstream 170831 1728121 ~ 1731958 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding downstream 175636 1732926 ~ 1735977 (+)
G33623 NA non-coding downstream 311640 1868930 ~ 1871903 (+)
G33737 NA non-coding downstream 471043 2028333 ~ 2030101 (+)
G33747 NA non-coding downstream 528353 2085643 ~ 2087531 (+)
LOC111192342 dnah9 other upstream 159656 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 555157 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 562294 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1123204 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1315758 181069 ~ 231917 (+)
amz2 amz2 other downstream 493452 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 2006740 3564030 ~ 3659132 (+)
G34309 NA other downstream 2613761 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3325266 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 4135232 5692522 ~ 5756116 (+)

Expression


Co-expression Network