G33611 (map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463)


Basic Information

Item Value
gene id G33611
gene name map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1732926 ~ 1735977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45245
taaataatggaCATTGGCGATtctatcgactaatcgttgcagccctacacaaaaaatattgtattattaaaaaaaaaataacattcacTACACATGTATTGTGCTTCACCTTGACAGCCATGATCTGACCACTAGGCTTGTGAACCATTTTGTTGACAGAGCCATAGGCTCCTCGACCAATCTCCCCCAGGTCCTTCAGGTCTTCTGCAGTGAAGTCCCAGTGCTGCTCAGGAGAGATCTTCAGCTTCCCAGATGATTCGATACTGTGGGTGCGCAGTCTCTCTATGTGTGGGTTCTGGAAGGAAGGAGTGCTCGAAGCAATGGGAAGTCTTGTATTTGGTTTAATCGGAGGATTAGCAAAGTTTAGCTTCAGTGCTTTGCGTTTacctgagaaagagaaagaggagattTAGCAgacaaaagacaagaaaaggGCTGGACAAAGCCGACACTGAGTATGAGAAGATCCAAAcactttgtacatttttaagcCCTCAAACTGTTCTAGATGATAAATGGAACATGTAGGTAGAACATGTAGTGACATGTAAAGATGTTCTGTGGTACAGCATGAAATGTGGTAAATATGGTGGCACGCTATGAATGAATATGCTGTAGGTTGTAACTTGttgatttttgttcttttcctTAGGCCTGacacaataattattttattatgtcaTTGTACAACATACAGACATGACCTCAGTATTACCACCATTGTAGGAAAAGCCTATTACAGTGAATGAGTTGGTATGTCAACTTGTGTTGAGAAACTGTGCAAactgtgcttttattttatttatttagcatatTAGGGCATGTTTAA
>TU45246
aaaaaatcagatttgtacaTTTAAGTACAGTCACAGTTATAATTCAATGAAAATGGCAAAGATAAACATCAGAGAAATGtttattagtgaataataaGGTTGCCACAAACTCACAGCCATGTAGGGTCTACATCCAGCATCTCTAGTCTTGGCTATGGAGTCAACCAGCTGTCCACTGATGCCAAAGTCACACAGCTTTATGTTGCCATTTCTATCCAGGAGAATGTTGGAGGGTTTGATGTCTCTGTggattattttcaagttttctttCAAGTGATTCAGTGCTTTCACAgtCGCTAATGTAATTTTGCCTAATATTTCCTCTGGAATGACATCATCTAACGAGCAATATACATATTTGTAGAATTTGTCAAACGAGGTAGACATAAGTTCCATACATATCCAACAGTcaccCTCTCGGAACAGAGCCCCATAGAACTGGACAATGTAGGGACAGTCACTACTCCTCATAACTACATCCAGGTCCATCAGCAACTGCTTCTGCTCCTTCTCATCAACAGTGGACCGAATCCTCTTGACAGCCATGATCTGACCACTAGGCTTGTGAACCATTTTGTTGACAGAGCCATAGGCTCCTCGACCAATCTCCCCCAGGTCCTTCAGGTCTTCTGCAGTGAAGTCCCAGTGCTGCTCAGGAGAGATCTTCAGCTTCCCAGATGATTCGATACTGTGGGTGCGCAGTCTCTCTATGTGTGGGTTCTGGAAGGAAGGAGTGCTCGAAGCAATGGGAAGTCTTGTATTTGGTTTAATCGGAGGATTAGCAAAGTTTAGCTTCAGTGCTTTGCGTTTacctgagaaagagaaagaggagattTAGCAgacaaaagacaagaaaaggGCTGGACAAAGCCGACACTGAGTATGAGAAGATCCAAAcactttgtacatttttaagcCCTCAAACTGTTCTAGATGATAAATGGAACATGTAGGTAGAACATGTAGTGACATGTAAAGATGTTCTGTGGTACAGCATGAAATGTGGTAAATATGGTGGCACGCTATGAATGAATATGCTGTAGGTTGTAACTTGttgatttttgttcttttcctTAGGCCTGacacaataattattttattatgtcaTTGTACAACATACAGACATGACCTCAGTATTACCACCATTGTAGGAAAAGCCTATTACAGTGAATGAGTTGGTATGTCAACTTGTGTTGAGAAACTGTGCAAactgtgcttttattttatttatttagcatatTAGGGCATGTTTAA

Function

symbol description
map2k4 Predicted to enable JUN kinase kinase activity. Involved in cellular response to mechanical stimulus. Predicted to be located in cytosol. Implicated in ovarian serous carcinoma; pancreatic cancer; and urinary bladder cancer. Biomarker of chronic obstructive pulmonary disease; invasive ductal carcinoma; and prostate carcinoma in situ.

NR:

description
dual specificity mitogen-activated protein kinase kinase 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45245 False 829 lncRNA 0.49 2 1735040 1735977
TU45246 True 1254 lncRNA 0.40 6 1732926 1735977

Neighbor

gene id symbol gene type direction distance location
myocd myocd coding upstream 11024 1598940 ~ 1721902 (+)
LOC103039538 LOC108424875 coding upstream 366408 1260650 ~ 1366518 (+)
foxk2 foxk2,LOC107719587 coding upstream 576755 1138439 ~ 1156171 (+)
wdr45b wdr45b,LOC107598578 coding upstream 594758 1129955 ~ 1138168 (+)
trnam-cau_18 NA coding upstream 611054 1121801 ~ 1121872 (+)
LOC103043447 LOC101477534,LOC105888841,LOC102192639,LOC100710639,LOC102295130,LOC103368359 coding downstream 23631 1759608 ~ 1782752 (+)
LOC111192346 gas7 coding downstream 48461 1784438 ~ 1799673 (+)
LOC103043879 NA coding downstream 71034 1807011 ~ 1814314 (+)
LOC103042228 chadl,LOC108413512 coding downstream 80261 1816238 ~ 1827981 (+)
trnaq-cug_1 NA coding downstream 101528 1837505 ~ 1837576 (+)
G33609 NA non-coding upstream 968 1728121 ~ 1731958 (+)
LOC111192343 NA non-coding upstream 175636 1547675 ~ 1557290 (+)
G33511 NA non-coding upstream 388005 1343410 ~ 1344921 (+)
LOC111192399 NA non-coding upstream 511796 1185065 ~ 1221130 (+)
LOC111192341 NA non-coding upstream 686423 1039042 ~ 1046503 (+)
G33623 NA non-coding downstream 132953 1868930 ~ 1871903 (+)
G33737 NA non-coding downstream 292356 2028333 ~ 2030101 (+)
G33747 NA non-coding downstream 349666 2085643 ~ 2087531 (+)
G33748 NA non-coding downstream 351982 2087959 ~ 2088160 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 381590 2117567 ~ 2119530 (+)
LOC111192342 dnah9 other upstream 344907 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 740408 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 747545 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1308455 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1501009 181069 ~ 231917 (+)
amz2 amz2 other downstream 314765 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1828053 3564030 ~ 3659132 (+)
G34309 NA other downstream 2435074 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3146579 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3956545 5692522 ~ 5756116 (+)

Expression


Co-expression Network