G33623


Basic Information

Item Value
gene id G33623
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1868930 ~ 1871903 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45265
tcACACTACCATATCTGTTTTAAAGTGCAATGTTTTAGAGAAGCAAAAGAAACCACAGATAACTGGGTAATATATTAGGATATATACACTGTTTCATTTGCTTGGCTTCCATCAGTCATAAGAAAAGTACAAAAGAATCAGATCAGTCCCCAGAGACTATCCTCAACTATACATTCAAATCAGCATAgaaaaatacagacaaaattGTCTTCAGTTCTCTTCAGCTGTCAACAGGCAAACAAGTAGGACACAAGTTTCTGCAGTGTAGACTGATGGAGTCACCGCTGGGTACGAGTACAcatcaaagtacattttaacagAATAACAATTTGACGATAGGCACACGTTGCAGTTTAAGTGCAGTTACTGAATAAGGTGGGACACAGTTTAAATcgaacaacaaaaacaaagtgCTACAAAGTGCTGCATTactctatattactctatatatttacattgttgttGGAAACTGTGTGATATGTATTTTAATAGCAAGACATGGAAAACAGTGGATGAACACCTCATACTTGTACATTTTACTATCTCTGACATCACACTGATAGTGGAATGTCATTAATCTGAAACTATTCAGGATGGTGCATGGAGAGTAAGGACATTGTTCTCTAAACACTTTAATAGAGTAATTGGGTAACACTGACACTATCTCCCATATAACAAGCTTTTACAAATAGAAATgtgtgaattaaaataatttaaggtGAGTATTATGTAAATTTATGCATTTGGCTTGATGCTAACTCTTCACAAatGCCTGATTTTCTTTCTGTTCCAACTCAGTTtttcaattaaaacaaattgtATTTTAACCATAGAAACAATCAATGCAGTGGGATAAGTTACTGTAAGATTATTTGTTCATAAATGGCACCACTTTTCAGTAATTGTCAATCATGTAAACTTAAAGACTCCTAAGTTCTTACAGAAGTAAATTATGTACTTTActgtagtgtttagtgttttttatgttagtattaaaaaataagtagtTCTACTTCAGAACGGTTTGTGTGAGAAGCTTTACTGTCATGGTAACGATAGCTGTGTCCAAAACTGTGGCCTATTTACATCACTAACCTCCACCAGACCAGATCCAGTGAAAGATTTTGGGAAACATTGCACCTAAAAACAGGCTAAGTGTCTCCCTCAGAGTAGCTGTATCCAAACCTTCAGGccaaaagagaagagaatacCCACTTCTAGGAGAATGTGTTCTAGTAAGtaagtccaaaatgaatgggtttgTATGGAGCATTTGAGCAAATCAGTTTAGTAATTGTaacttttatcccattttctctctgattctctcactgccaattacccaacccactcagtaGGAatcccccccatcactagtgatgccccaacaccagtgATGCccaagactagcacatgccttctccaacacatgtgaaatcagccaccgcctcttttcaaactgcttctaatgcagcattgcagagtactGATGCAGCCCcaaggaaagcgcagtgactcggttctgatacatcagctcacagacgccttgtgctgatcgacatcaccctttggagtgatgaggagaaagagcgccatctacccacccagagagagagagcaaggccaattgtgctctctcggggctctgatggcaagctgcatgaacaggattcgaaccagcaatctcctgattatGGTGGCAaggcttagcctgctggaccactcggagcccccaAAATGTTTGACATTTTTTATACTTAACAAATGCACTTGTTTAATGGAATAATATCAAATGTGTCAGAAGTGCGGACATCATTTTTAAACTTTCTCACTTCAAACAAGCCTTTTTTGTCCAAAAATTGGatataatgtaaatactttattgtactttctaaaattatagaaaaataagCAGACACTATTTTCAATTTAAGTTAATCCATTTAGCTCCTTTCATCCCCATTCACTCAATTCTTACTTGTGGACTCTCTCTAGAATTTTGCAGTCTTTTCTGATATAACAGTGGAAATAAGAAGTGGGCATACTCTCTGTAAAATGGCTCCTGGACTGTTTGTTTACTCTATATTAAAACGCACTGTCGCGATTGTCACAGTATGCTAAATTTCAGCATCTAATCTCAGACACAGCTACAAAATGGAAGAACAAAATGTTTTGATTAGTGCACTATATGGGTAATAGGGCAAAGATTCAGACTCAGCTAATACACCATTACACTAATATTCCATTGGGTATGCACAGCACATAATAATGTTCCTGTATACACCTGAAGCTTCATATCaattaaaacacactgaatcatTCACACTGAATCACTTTGGTCTCCCACAGTCAGTCTAAATGTGTACATTGAGGCCACATTAtgcttaaaaatattatatatagataaataaaatagtattgAACTTACCAGTATTTAGATAAGTAGCAGTACTATTAGAGTGCAACTTTTATTATCTCTTCTACTTCCACTGTAATCACTGTTACAGGCTTTGAAGACTAAAACTATGTTGTTAAATAGAGAAGTCCTCCTCAGCGGACACAACACAACAGTGCAAGTTAAAGACAGCATGAATAATTAATCTCCATGCTGAGGTTGCTTCCTGTGCTAATTATGAATCTACTTTGAAATGTTAACGAATGCCATGCAGTAGAGTGAATTACGTCAAAACATTCCAACATAGTGCATTTGATCAAATTCTCACGTACCACCAACTCTCTCCAACTCTTCCTCTCACACCATCTTCACTCCTCCCCAAGTCTCAGTACAGTATTAGAACTCCAGTTCCCAGCTTCTGAAAAAGCCTTTTGCAACCACTGCCTCTTTAAAAGTAACCGTCAGCGAATTGATGGTGACATCTGTCACAGTTACATCTTCTGGACCTAACACTGGCCTCCATTCCTTACATGCTTTTGGAGTTATTGAATTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45265 True 2950 lncRNA 0.38 2 1868930 1871903

Neighbor

gene id symbol gene type direction distance location
LOC103044365 LOC108273944,LOC108413510 coding upstream 279 1846203 ~ 1868651 (+)
trnaq-cug_1 NA coding upstream 31354 1837505 ~ 1837576 (+)
LOC103042228 chadl,LOC108413512 coding upstream 40949 1816238 ~ 1827981 (+)
LOC103043879 NA coding upstream 54616 1807011 ~ 1814314 (+)
LOC111192346 gas7 coding upstream 69257 1784438 ~ 1799673 (+)
LOC103046730 desi1 coding downstream 33130 1905033 ~ 1909731 (+)
LOC103047034 shisa8 coding downstream 58265 1930168 ~ 1967340 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding downstream 171662 2043565 ~ 2049789 (+)
arsg arsg coding downstream 194474 2066377 ~ 2074253 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding downstream 216654 2088557 ~ 2097830 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 132953 1732926 ~ 1735977 (+)
G33609 NA non-coding upstream 136972 1728121 ~ 1731958 (+)
LOC111192343 NA non-coding upstream 311640 1547675 ~ 1557290 (+)
G33511 NA non-coding upstream 524009 1343410 ~ 1344921 (+)
LOC111192399 NA non-coding upstream 647800 1185065 ~ 1221130 (+)
G33737 NA non-coding downstream 156430 2028333 ~ 2030101 (+)
G33747 NA non-coding downstream 213740 2085643 ~ 2087531 (+)
G33748 NA non-coding downstream 216056 2087959 ~ 2088160 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding downstream 245664 2117567 ~ 2119530 (+)
G33788 NA non-coding downstream 251984 2123887 ~ 2124173 (+)
LOC111192342 dnah9 other upstream 480911 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 876412 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 883549 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1444459 419010 ~ 424471 (+)
hectd2 hectd2,LOC107584154,LOC107594154,LOC107758436,LOC107753452 other upstream 1637013 181069 ~ 231917 (+)
amz2 amz2 other downstream 178839 2050742 ~ 2056963 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1692127 3564030 ~ 3659132 (+)
G34309 NA other downstream 2299148 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 3010653 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3820619 5692522 ~ 5756116 (+)

Expression


Co-expression Network