G33693 (LOC108413510,LOC108273944,LOC100698988)


Basic Information

Item Value
gene id G33693
gene name LOC108413510,LOC108273944,LOC100698988
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 1862786 ~ 1863512 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45353
GAAAAATTGGTCGATTTCTTACCTCGCATACAGTACAGTGGAAACGCGTTTCAACGTGATGTTTGCATTCATTACAGGTGTAGACAAACCGATCTTGGCTCTGGTTGTGCAGCTCTACCAACATACACATCGAACTCCATCTGGAGCGCCTTAGTGAGGAGAATTCCAGATGTTTGTCCCGCGCCAGTGTCAAGAAAGCATCTCTTCCATCCATCAGGTCACATGCCATTAAGGGATCCGGGTCAATAATGGGTGGAAGAGCATTGGAGTTGGGTCCAGCACTCAGTCGGATAACGAAGAACACCTCTTTGTGCTTCTCCATAGTTGCATAGAGCTTCTGCGACAAGTCATTGGACACATTTGGCATTCCTGGTTTCTTTTTGTTGGCTCGGCTCAGACTGCTCTTGTTCTTGCTTgtctttttattgttctttttcttgGCATTTTTGCTATCGCCCTTTGTAGCATCTACACTTTCACTCGACGTATTATTTtcctctcgttttctctcttcttcctcctgTTCCAGCTCCTTAATGCTCTCTTCAAGCAC

Function

NR:

description
PREDICTED: histone acetyltransferase p300-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45353 True 553 lncRNA 0.45 3 1862786 1863512

Neighbor

gene id symbol gene type direction distance location
LOC103040308 NA coding downstream 25502 1825489 ~ 1837284 (-)
LOC103044468 NA coding downstream 109243 1745216 ~ 1753543 (-)
LOC103043761 NA coding downstream 109272 1749204 ~ 1753514 (-)
LOC103042940 map2k4,LOC108424869,LOC108274195,LOC108433489 coding downstream 121311 1729023 ~ 1741475 (-)
dnah9 dnah9 coding downstream 315034 1378988 ~ 1547752 (-)
cbx7 cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943 coding upstream 7098 1870610 ~ 1878209 (-)
josd1 josd1,LOC107660868 coding upstream 15746 1879258 ~ 1889279 (-)
LOC103046112 NA coding upstream 26759 1890271 ~ 1895993 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding upstream 34673 1898185 ~ 1904629 (-)
LOC103047336 LOC108444256 coding upstream 114102 1977614 ~ 2017175 (-)
G33690 LOC108413510 non-coding downstream 5071 1856968 ~ 1857715 (-)
LOC111192345 NA non-coding downstream 135529 1720811 ~ 1727257 (-)
LOC111192344 NA non-coding downstream 142340 1718648 ~ 1720446 (-)
G33545 NA non-coding downstream 688131 1174440 ~ 1174655 (-)
G33539 foxk2 non-coding downstream 706609 1153432 ~ 1156177 (-)
G33731 NA non-coding upstream 112317 1975829 ~ 1976108 (-)
G33732 NA non-coding upstream 112817 1976329 ~ 1976585 (-)
G33759 NA non-coding upstream 210823 2074335 ~ 2074606 (-)
LOC111192348 NA non-coding upstream 217463 2080975 ~ 2083243 (-)
G33804 LOC108444266 non-coding upstream 264755 2128267 ~ 2130172 (-)
G33675 NA other downstream 50164 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1461474 389434 ~ 401312 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other upstream 158559 2022071 ~ 2042303 (-)
G33823 srcap other upstream 305511 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 331245 2194757 ~ 2196095 (-)
G33904 NA other upstream 439750 2303262 ~ 2309329 (-)
G34046 NA other upstream 1317656 3181168 ~ 3194377 (-)

Expression


Co-expression Network