G33754 (snf8,LOC107692042,LOC107660854,LOC107734219)


Basic Information

Item Value
gene id G33754
gene name snf8,LOC107692042,LOC107660854,LOC107734219
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2117567 ~ 2119530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45440
CATTTCAAGACATTCAAGCTACCAGTtatctctcacaaacacacatcaaGGAAGCACTCAACATTGTGATTTCAGCACTATAAAGGATAGTATTCAACCTAGTTGAAAACATTATCGTCACTGATTTCTCAGTTTATACCAAATCATTTCTTCTGTTCATGGTGTCATTTGGTTAGCCTCCTCAGGTGTGACATCACGAGAAGAAAGTTCAGAGAACAGGGCGGGCAGCCAGTATTGTGGCTCCCCAGCAGCTTGGGAATCCAACCATGCTAGACCCTCTTTTAGCAGGTGGTCCTGAACAAAAGAAAAGTCACAAATTCAGTGTATTCCTAAGGTGTCTAATCAAACATCCGTATATTCTTAACTAGTGCTGCTTGAACACTCACAAGTACGTGACAGGCCCGTTCCTTCTCCCATTTCAGGCTGTCTCTGATCTCACTCACTGTTACGTAGCCCTTTTTCTGCAAGAAAAATTTAATATTCTGCACAAACCTAAAAGAACTAAAGGTTATGTCACTCATTTTTAACACTGATTACCTCAGCCAGCTGAAGGACGACCGTGTGATCCATGTTGAGCTCAGCGGGGACTGACTGGACTAAATAAGAGCCTCCAACAGGAATCATTCCAAAGCCATTCCCCATCGCTTTGAGTTTTTTGATGGCCCGTACCAAGTCATCTTGGCTCACATCCTGAGCAAACTTCCCTCTTCCCTTTAACACACGCTGATGGAGTTCATCTAGAGTGATGAGTCCTATtggaagtgaagaaaaaaaacttcaactaacatgcttttttttgtttagttcttgtcattaaaaaaaaaaacagtcaacagTACAGCAAATAGCTTCTTTAAAGACTTATGTCTAATATTAAGGACATTCAATTGTTTAAATGCAATACCTAAATTAAGGTAAGTCTTACTTACCCCCATTTCTGTGCTTTAGAGCAAGACAGACTTCAATTATCTGCACACCAAGCTCGTAGTAGAAATCTCCAACTCCAAGCATCTCTGACCAAAATCCTTTACCGGCTGTTtatggtaaaaaataaagccaaaaacctcaataaataatgttatataagacTTAGGAGACCTTAGGATGTCCTTGtgaaacatattttataatgaatgtaaatgtgaaGTGTGAATCAAAAttctttttataataatttaacattGTGTTTAATCATTAGTACTTACATGCTAGTGGGTCGACTCCTATTGTAGCACACATTTCTTGGAACTGAACTCTGAACTGTGAACTCTTTCGAATCTCTTGCTTGTGTTTGCTGGCAAATTCCTCCAGATGGGTTTTAAAGGTTTCTAACTGTTTAGACATCTACAGAGAAAATGGTCAGGTACCATAATTGAACAAAACTGTGATCCTATGCAGGGCACTAATGTCCAATTTTAGCAAAGGAAATTGTGAATTTCCAATTCTTAGAGAGTAGGGATCTGTATTGACTTATATTTACCTGTATAATCTGATCTTCAGCCAGGACTGTCCCTCTTTCTTTGTACTTTGCCTATAACCATAAACAAATAATGGGTCAATAAACATGATGTGTATTTCTATTACATGAATGCAgcataatgttttatatgtacTACTTTGTATTAAATCTTTTGTAAATAATGAGGAATGGCAACAAGATCTCAATTCTCCAGTGTTGAAACCTAATTCatggcagaaaaaaatacactaacaaTGATGTAACATTGTAACAAAATCCAGATGTTAAACTGAAAGAAAGTTATTAAATAGAGTAAACCATTAAATACTAAGGGGGCAATTTAATAACTGAATGACTTACTAAACTGAAAGTACAATTTATTA

Function

symbol description
snf8 Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human SNF8 (SNF8 subunit of ESCRT-II).

NR:

description
vacuolar-sorting protein SNF8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45440 True 1842 lncRNA 0.48 2 2117567 2119530

Neighbor

gene id symbol gene type direction distance location
calcoco2 NA coding upstream 372 2108471 ~ 2117195 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding upstream 10438 2099155 ~ 2107129 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding upstream 19737 2088557 ~ 2097830 (+)
arsg arsg coding upstream 43314 2066377 ~ 2074253 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding upstream 67778 2043565 ~ 2049789 (+)
LOC103026968 LOC108444266 coding downstream 6090 2125620 ~ 2130212 (+)
LOC103028296 LOC108444267 coding downstream 15666 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 33354 2152884 ~ 2177072 (+)
ttll6 ttll6 coding downstream 58649 2178179 ~ 2188201 (+)
LOC107197898 NA coding downstream 72512 2192042 ~ 2195665 (+)
G33748 NA non-coding upstream 29407 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 30036 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 87466 2028333 ~ 2030101 (+)
G33623 NA non-coding upstream 245664 1868930 ~ 1871903 (+)
G33611 map2k4,LOC108424869,LOC108274195,LOC103366173,LOC107719678,LOC107556463 non-coding upstream 381590 1732926 ~ 1735977 (+)
G33788 NA non-coding downstream 4357 2123887 ~ 2124173 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 11144 2130674 ~ 2134078 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 157238 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 214213 2333743 ~ 2334085 (+)
LOC111192349 NA non-coding downstream 275783 2395313 ~ 2477487 (+)
amz2 amz2 other upstream 60604 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 729548 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1125049 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1132186 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1693096 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1444500 3564030 ~ 3659132 (+)
G34309 NA other downstream 2051521 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2763026 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3572992 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4127116 6246646 ~ 6258050 (+)

Expression


Co-expression Network