LOC103022010 (rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735)


Basic Information

Item Value
gene id LOC103022010
gene name rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2022071 ~ 2042303 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45451
GACAGCCAGCGTCTCGGTGTGTgtatcaataataataagagattAGGCTGGATTAGTAAAACTCCCACGTTCATCCGAGAACCCGCTTCATTCCAGCTCCTCGACGGTGATCTGCAGGCTGCTCCTCCTCTGCTGTGCGGACCACAGACCCAATCATGACCATCAGAAACGTGCGGGATCACGGACAGCGCTACAGACCGCGGATGGCTTGTCTGAAAAAGCTGGAAGCTGTGGTGCTGGAGATGCAAGACCCCAAGACTGGGGTGAAATCTCAGACACAGAGACTGGTCATCACCACCATTCCTCATGCCATAACAGGTGAAGATATTGTTGAATGGATTGCTAATCGCTTCAAAGTCGGTGCTGCTGGTAAGTTGGGTgcattgtttctgtgtgtattcTAGTGCACATTGTCTGTGTTGCATCAACACCTTCTGTATCTctgggaataaaaaaataaatactttgtaCAGTGAAAATACAGCATGATGCAAAACAACCATGTCCTGCCAAAACACGTAAACAAGAAAAGGCAGTTTTtgcaaaaattattattattatatatcaaagtatt
>TU45452
GACAGCCAGCGTCTCGGTGTGTgtatcaataataataagagattAGGCTGGATTAGTAAAACTCCCACGTTCATCCGAGAACCCGCTTCATTCCAGCTCCTCGACGGTGATCTGCAGGCTGCTCCTCCTCTGCTGTGCGGACCACAGACCCAATCATGACCATCAGAAACGTGCGGGATCACGGACAGCGCTACAGACCGCGGATGGCTTGTCTGAAAAAGCTGGAAGCTGTGGTGCTGGAGATGCAAGACCCCAAGACTGGGGTGAAATCTCAGACACAGAGACTGGTCATCACCACCATTCCTCATGCCATAACAGGTGAAGATATTGTTGAATGGATTGCTAATCGCTTCAAAGTCGGTGCTGCTG
>XM_022668891.1
ACAGACACCATATTTCTGGCCTGCACAACAGTGGCCAGTGGAGGACACAGACTACGCAATATATTTGGCAAAGAGgaatatacgtaaaaaagggaTGTTAGAGCTGCATGAACAGGAGCAGTACAATAATCTTCACAAATGGATGAACCACAAGTGGGACTTCATTGTGATGCAGGCCAAAGAACAGTACAGGGCaggaaaagagaggaagaaaccaGACCGAGTGGTGTTTGACTGCCAAGAGAGAGCCTACTGGGTAGTGCACAGACCACCTCCAGGAACGATTAGTGGCATGGACTACGGACTGGAGCGACTTGTAGATCCCAACCTAGAGGAGAAACAATCATCTGACCACTACAGAAGGATAATAATCTTCACTCAGCAGTGCATCATGAGGCCTAGAGTGAAGTCATCTGTGTCCATTGGAGCaCTTGTGAAGTACAGCACAACATACAAGCAGCATGACCCATTCCTTTACCCATGCCTTCCCAGCAACCCCTGGTTAACAGATGATGTCACGTACTGGCAGCTTAACATGCAAAAtATTGAAAATCCAACAAAAATGAGAGTGGAGCGCTGGACTTTCAGCTTTGGTGAACTGCTGTCTGACCCTCGCGGACGAGACGATTTCCGCCTCTTCTTAAAGAAAGAGTTCAGTGGTGAAAACCTTGCATTTTGGGAGGCGTGTGAAGATCTCAAATGGGGAACTGCAGCTACAATGAAAGAGAAAGCTCAGCAGATCTACAAaacGTTCCTGGCTCGCGGAGCTCCTCGCTGGATCAACATTGATGGAAAGACCATGGAGATTACAGTGAAGGGCCTGTCTCACCCTCATCGCTATGTTCTGGATGCTGCGCAGACCCACATCTACATGCTGATGAAAAAGgaCTCATATGGCCGATACCTGAAGTCCCCTGTGTTTAAGGAGACTCAGAAGAAGGCTGTAGTTCCTGAGCCACACAACTTCAGTGATTCCCAGCTGGAGCAGAATGCTAAGAAGAGAAGGCCCAGCCTGAGCCCCATTATCCTGaggcagcaggaggaggagcagaAGGCCAAGCTGGCTGCCAGCGGACCTGTGGACATAACGCAGCTGTGCCGGTTCACTGCCCCTGTGCCCCACTTGGCTGTGTATACAGGCATCTGTGAGAATCAGTCCACTGCCTCACCGGGCCTGATGACACTGCCCAACAGCGCAGCGTGTCCTTCACCCATCAGTGTGGCAATCGACAGCACCCCAGCCTCTGAGAGAAGTTTTTTCCAAATTAAAGTGGACATCCCTCCAGAATGCCGCATTTACCCAATTGACtcggaggatgaggaggaggagagttCCGGAACAGCGAGAGGTGGAGTGAAGGAGATCATCTGCCCGTGGGAATCAGTCACCAAACATGACGGAGCAGGATAGAGGTTCTCTGCAGCGCAAGCgtgaaacaaagagagagaaacgtgGGTCACGGCGTCGCCATCTTTACCAGTCAGACATGCGCTAGGAGTCGACAATTAAAAATTAACAACATTTCAAATCTAATTGTCTGTATTTCTGATAGCTTATAAGTAGTACCTACATGTTCTAGTAGCTGGTGGAACAACTTGGTTGTAACATGGTTGTGGGATTTTATATCTGTATACCTGTTGACTATCTGTGGGTATGGCAAGAGGAGGCCTTATTTTAGAggagctgtttttgttttttggaaaattGTTGTCAAATCATTTAGTATCGCAAAGATTTTGTACTTGGTATGTtcatcattttatatatatatatcaaagatGCATTATTGTAAACCTCTTTacaaaatattcaatattttcaTAGTTGTATCTTCAGGAAGACAGTAAAACGAGATGTGGGACTGTTTACTGTCTGAATGTATTACCTTTAACAATGTTTACAGTTCACTACAGAATGCGAATGTGGTTATTGCTCATCTTTGACTTGTGGAAGTGCCtcaataaaatacttaaaataaa
>XM_022668892.1
AGGAGCGGCAATGTTCTCTGATTGGTGGAGACAGCCAGCGTCTCGGTGTGTgtatcaataataataagagattAGGCTGGATTAGTAAAACTCCCACGTTCATCCGAGAACCCGCTTCATTCCAGCTCCTCGACGGTGATCTGCAGGCTGCTCCTCCTCTGCTGTGCGGACCACAGACCCAATCATGACCATCAGAAACGTGCGGGATCACGGACAGCGCTACAGACCGCGGATGGCTTGTCTGAAAAAGCTGGAAGCTGTGGTGCTGGAGATGCAAGACCCCAAGACTGGGGTGAAATCTCAGACACAGAGACTGGTCATCACCACCATTCCTCATGCCATAACAGGTGAAGATATTGTTGAATGGATTGCTAATCGCTTCAAAGTCGGTGCTGCTGGTAAGTTGGGTgcattgtttctgtgtgtattcTAtgtttttttgttgttgttattaataaCAACAAGTCTGATCCCATTTCTTTTACAGACACCATATTTCTGGCCTGCACAACAGTGGCCAGTGGAGGACACAGACTACGCAATATATTTGGCAAAGAGgaatatacgtaaaaaagggaTGTTAGAGCTGCATGAACAGGAGCAGTACAATAATCTTCACAAATGGATGAACCACAAGTGGGACTTCATTGTGATGCAGGCCAAAGAACAGTACAGGGCaggaaaagagaggaagaaaccaGACCGAGTGGTGTTTGACTGCCAAGAGAGAGCCTACTGGGTAGTGCACAGACCACCTCCAGGAACGATTAGTGGCATGGACTACGGACTGGAGCGACTTGTAGATCCCAACCTAGAGGAGAAACAATCATCTGACCACTACAGAAGGATAATAATCTTCACTCAGCAGTGCATCATGAGGCCTAGAGTGAAGTCATCTGTGTCCATTGGAGCaCTTGTGAAGTACAGCACAACATACAAGCAGCATGACCCATTCCTTTACCCATGCCTTCCCAGCAACCCCTGGTTAACAGATGATGTCACGTACTGGCAGCTTAACATGCAAAAtATTGAAAATCCAACAAAAATGAGAGTGGAGCGCTGGACTTTCAGCTTTGGTGAACTGCTGTCTGACCCTCGCGGACGAGACGATTTCCGCCTCTTCTTAAAGAAAGAGTTCAGTGGTGAAAACCTTGCATTTTGGGAGGCGTGTGAAGATCTCAAATGGGGAACTGCAGCTACAATGAAAGAGAAAGCTCAGCAGATCTACAAaacGTTCCTGGCTCGCGGAGCTCCTCGCTGGATCAACATTGATGGAAAGACCATGGAGATTACAGTGAAGGGCCTGTCTCACCCTCATCGCTATGTTCTGGATGCTGCGCAGACCCACATCTACATGCTGATGAAAAAGgaCTCATATGGCCGATACCTGAAGTCCCCTGTGTTTAAGGAGACTCAGAAGAAGGCTGTAGTTCCTGAGCCACACAACTTCAGTGATTCCCAGCTGGAGCAGAATGCTAAGAAGAGAAGGCCCAGCCTGAGCCCCATTATCCTGaggcagcaggaggaggagcagaAGGCCAAGCTGGCTGCCAGCGGACCTGTGGACATAACGCAGGTTATGAGCAAACTGGCCCAGAAAAAGGGGACGGAACACAGGACTTAGATATTATAGCATATTATAGCATtggctttatattttattcttctcAGTTAGAGACGGGTACTGCACTGATACCAGCAGAACATTCTGGATCAGATGTTAGAAGAGACAAATATCAAACAGTATCTGATAGCCTCAAATATTGCAGATTTGCTTATAGAGCAAACTAGTGATGGGAGGTTAATctaattaattagattaatcaactgacttttttaatgcagttttcaAAATAGAATAATCAAGATCTTTACAAAGAGAACCTGCCAGAGGGAATCTAAGTAGATTGGCTTATGCTCCTGTAAAGAAGTCTTTTATGTGGCAGCAATTTTCATATCTTGCACTTTTCCTTATGTGAAATATAAGGAAGTTACTGTTTCCCCCTTTTCAGTATAGTGCTGTGTATTGGCTAGAACTTGGCATTAcgataatatttttaaacaggtCTTATGATTTAGTATTCAAATGTTAGAAAACATtttcataatattaaaaaacacactatcatatttataaaatctgaataataggaactgctatctagtgggtgAGGTCAAAATGCAACTCAAAATGAATCACTgtgtttacatgtaaactattaattaaaaatcaatactttgttttaaaaaaaaatctacagtatTACAGAACAGAATATTTTGATACAATACAATAGATTCATATTTTCTTACACagtttagtataaaaaaaaagattttgtctcccttaaaaataaatttaaaataaacaatactttGCTAAtttgaatgctctaaatggtgCTGTTTTTGCTATTATGGCACATCTACAAATAGATGGCAAATGAACAAAAACctgaatagatttttttttcaagtatcACTTATACttgaaaatgattaagattattttttttttacattattgcccagccctagtgCAAAGCATACACAAACACGTCACATGTATTCCAAAAATAGAACAGATGAAGTAACCTGCTAAATACTACGTTAGAATTATTATTGGtttgtttgatttaaaaaaaagcctcaGTTCTGTGAAACGAAACAGCTGGAAGGTTCTGCACttttaagatgtttaaaataacttattttacagcTTATAAGCTTTTTAAAGACGGACAGTATTGTATTATTCATGACATTATCTAATAACtctaagttttggaaaagtgaTGTTGTATAATGTCTAGCTTTAGCTCACATCACCTGATGTTCTATATAGAGTAAATCTAAATGTGTATACTGTAGgttgtaaaatattattttaaaactttctATGTGTAGTAGAATACTGCATATGATTATAAACAAAAGTACTAAAGTGCAAAAAATTACGTTAAAAAATGTGCGCATTGGTTCCACATGAAGCAAATATTTTATATCAGCATATTTGCTGAGCACTTCATTCACATAAATGTTCATGTTGTTTGTATGGATATcatgtacatttttattcattcattatttaaatcattGAATATGTTTTCCATGTCCCCTTTGTCTTTGTTATATTGTCCTgtccatataaaaaaataattgtgagtACATTTGATGTTTTAtcatattatgttatttttgtgCTCATTTTGTGAAACAAAACATTCAGCAAGTGATATCATTGTAAATCACCACCCATTTTTCTGTCCCTTGTATCACAGTGTCTGCtgaatgatgctgtttgttatTCATGTAATAAAGTCAAATCATTCCTGTCAA
>XR_002649841.1
ACAGACACCATATTTCTGGCCTGCACAACAGTGGCCAGTGGAGGACACAGACTACGCAATATATTTGGCAAAGAGgaatatacgtaaaaaagggaTGTTAGAGCTGCATGAACAGGAGCAGTACAATAATCTTCACAAATGGATGAACCACAAGTGGGACTTCATTGTGATGCAGGCCAAAGAACAGTACAGGGCaggaaaagagaggaagaaaccaGACCGAGTGGTGTTTGACTGCCAAGAGAGAGCCTACTGGGTAGTGCACAGACCACCTCCAGGAACGATTAGTGGCATGGACTACGGACTGGAGCGACTTGTAGATCCCAACCTAGAGGAGAAACAATCATCTGACCACTACAGAAGGATAATAATCTTCACTCAGCAGTGCATCATGAGGCCTAGAGTGAAGTCATCTGTGTCCATTGGAGCaCTTGTGAAGTACAGCACAACATACAAGCAGCATGACCCATTCCTTTACCCATGCCTTCCCAGCAACCCCTGGTTAACAGATGATGTCACGTACTGGCAGCTTAACATGCAAAAtATTGAAAATCCAACAAAAATGAGAGTGGAGCGCTGGACTTTCAGCTTTGGTGAACTGCTGTCTGACCCTCGCGGACGAGACGATTTCCGCCTCTTCTTAAAGAAAGAGTTCAGTGGTGAAAACCTTGCATTTTGGGAGGCGTGTGAAGATCTCAAATGGGGAACTGCAGCTACAATGAAAGAGAAAGCTCAGCAGATCTACAAaacGTTCCTGGCTCGCGGAGCTCCTCGCTGGATCAACATTGATGGAAAGACCATGGAGATTACAGTGAAGGGCCTGTCTCACCCTCATCGCTATGTTCTGGATGCTGCGCAGACCCACATCTACATGCTGATGAAAAAGgaCTCATATGGCCGATACCTGAAGTCCCCTGTGTTTAAGGAGACTCAGAAGAAGGCTGTAGTTCCTGAGCCACACAACTTCAGTGATTCCCAGCTGGAGCAGAATGCTAAGAAGAGAAGGCCCAGCCTGAGCCCCATTATCCTGaggcagcaggaggaggagcagaAGGCCAAGCTGGCTGCCAGCGGACCTGTGGACATAACGCAGCTGTGCCGGTTCACTGCCCCTGTGCCCCACTTGGCTGTGTATACAGGCATCTGTGAGAATCAGTCCACTGCCTCACCGGGCCTGATGACACTGCCCAACAGCGCAGCGTGTCCTTCACCCATCAGTGTGGCAATCGACAGCACCCCAGCCTCTGAGAGAAGGTTTGACAGTGGGGGTACTGCCTCCTCCCATTTCCCCTCTATAGCTGAGAGCGCTGAGACGTCTGTGTCAGAGGAGAGCCAGCCACCTCCACCAAAGTCCCGTGTAGCCCTGTCCCTTAGCCGCCTCCTCCGCCGGGGATGCAACGCCCCATCAGTGTTCGCCAGCTTGTCACCGAAATGTGCCGTTACTGCGGGAGGAGGGAGAGTCCAGCCGCTGGGAGAACCTCTCGCACAACCACAGCCCAAGAGGATTGCAAAGTTAGTTAGATACTGAACAACTGCATTCATAATAAATTGATCCATAGGTTTATTATGCAGCTATAAATTGGATGATTTGTATTTTGTGGAGTTCCCCAGGGGTCGATTTTAGGACCAAGTACAATTTAATTCCAAAGGACATGTGACAGCAATATATAAATTGATGATGTGTGTTATTCATAAGTGAGTTTTTTCCAAATTAAAGTGGACATCCCTCCAGAATGCCGCATTTACCCAATTGACt

Function

symbol description
rgs9b Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Human ortholog(s) of this gene implicated in bradyopsia. Orthologous to human RGS9 (regulator of G protein signaling 9).

NR:

description
PREDICTED: regulator of G-protein signaling 9-like isoform X2

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K13765 RGS9; regulator of G-protein signaling 9

RNA

RNA id representative length rna type GC content exon number start site end site
TU45451 False 574 TUCP 0.45 3 2036125 2042274
TU45452 False 369 TUCP 0.51 3 2035094 2042274
XM_022668891.1 False 1980 mRNA 0.46 15 2022071 2034470
XM_022668892.1 True 3339 mRNA 0.39 16 2025560 2042303
XR_002649841.1 False 1756 misc_RNA 0.50 15 2022741 2034470

Neighbor

gene id symbol gene type direction distance location
LOC103047336 LOC108444256 coding downstream 4896 1977614 ~ 2017175 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding downstream 117442 1898185 ~ 1904629 (-)
LOC103046112 NA coding downstream 126078 1890271 ~ 1895993 (-)
josd1 josd1,LOC107660868 coding downstream 132792 1879258 ~ 1889279 (-)
cbx7 cbx7,LOC103382143,LOC107554058,LOC107660863,LOC107584093,LOC107709653,LOC106608943 coding downstream 143862 1870610 ~ 1878209 (-)
LOC103022929 slc16a6,LOC108444260 coding upstream 13797 2056100 ~ 2066246 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding upstream 32327 2074630 ~ 2087567 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding upstream 75237 2117540 ~ 2120383 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding upstream 88715 2131018 ~ 2134043 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 234454 2276757 ~ 2282984 (-)
G33732 NA non-coding downstream 45486 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 45963 1975829 ~ 1976108 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 158559 1862786 ~ 1863512 (-)
G33690 LOC108413510 non-coding downstream 164356 1856968 ~ 1857715 (-)
LOC111192345 NA non-coding downstream 294814 1720811 ~ 1727257 (-)
G33759 NA non-coding upstream 32032 2074335 ~ 2074606 (-)
LOC111192348 NA non-coding upstream 38672 2080975 ~ 2083243 (-)
G33804 LOC108444266 non-coding upstream 85964 2128267 ~ 2130172 (-)
G33833 NA non-coding upstream 149787 2192090 ~ 2192968 (-)
G33835 NA non-coding upstream 151984 2194287 ~ 2194607 (-)
G33675 NA other downstream 209449 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1620759 389434 ~ 401312 (-)
G33823 srcap other upstream 126720 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 152454 2194757 ~ 2196095 (-)
G33904 NA other upstream 260959 2303262 ~ 2309329 (-)
G34046 NA other upstream 1138865 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1740822 3783125 ~ 3789192 (-)

Expression


Co-expression Network