G33788


Basic Information

Item Value
gene id G33788
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2123887 ~ 2124173 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45482
TTGACCTTAGGccacaaaacacttttttgattGTTACACCATGTCTTTAATTTTTGGATTGTTCTTTTCTCACAAAATATcacatgtacttttttttttacttaataaaatattttagtttttgccTAGGCCAACATTATGCAGTTGGGCCACTTTTGTTGGGAATAACGCTAAGGTCGTGGTGGTTATTAATTTCCTttttacaaaactaaaataaaatccgTGTTTTTGCATATTCTTGTATATCTGTGCATATTTCacatttgttgtgttttatttactgtatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45482 True 287 lncRNA 0.30 1 2123887 2124173

Neighbor

gene id symbol gene type direction distance location
calcoco2 NA coding upstream 6692 2108471 ~ 2117195 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding upstream 16758 2099155 ~ 2107129 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding upstream 26057 2088557 ~ 2097830 (+)
arsg arsg coding upstream 49634 2066377 ~ 2074253 (+)
LOC103022306 LOC108444258,LOC108273768,LOC107734232,LOC107660858,LOC107584085 coding upstream 74098 2043565 ~ 2049789 (+)
LOC103026968 LOC108444266 coding downstream 1447 2125620 ~ 2130212 (+)
LOC103028296 LOC108444267 coding downstream 11023 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 28711 2152884 ~ 2177072 (+)
ttll6 ttll6 coding downstream 54006 2178179 ~ 2188201 (+)
LOC107197898 NA coding downstream 67869 2192042 ~ 2195665 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding upstream 4357 2117567 ~ 2119530 (+)
G33748 NA non-coding upstream 35727 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 36356 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 93786 2028333 ~ 2030101 (+)
G33623 NA non-coding upstream 251984 1868930 ~ 1871903 (+)
G33791 chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 non-coding downstream 6501 2130674 ~ 2134078 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 152595 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 209570 2333743 ~ 2334085 (+)
LOC111192349 NA non-coding downstream 271140 2395313 ~ 2477487 (+)
G33882 NA non-coding downstream 305771 2429944 ~ 2430202 (+)
amz2 amz2 other upstream 66924 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 735868 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1131369 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1138506 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1699416 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1439857 3564030 ~ 3659132 (+)
G34309 NA other downstream 2046878 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2758383 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3568349 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4122473 6246646 ~ 6258050 (+)

Expression


Co-expression Network