G33791 (chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279)


Basic Information

Item Value
gene id G33791
gene name chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2130674 ~ 2134078 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45491
TCCcagtttaatttttcttttagatAAATACTTTACTATAATACACCAGTAATcatacatttgtttgtttaaaccCTTTCACCACAAATAAATTTCTTCTTTAAACGGGAGAAACTAGTGGAGAATGATTGATTTTAGTTAAGCAAAATCTGACAACCCATTGGTTGTAGGGCAAGTAAAGAACAATTCAGTAAAGTTTAGGCAAAGAGTTTCCTGATCTGATGTGGTACCAGAAAAAGTTTtctgataaaatatataaaccacTGCGCTTGAAAGATTTACATTTCTGAAATACAACCACAACTATACTAATGAGACATGTAAAGTTGTAGTAATGCTTTGCACTACTTGTATAAAAATCTGTTTACAATCAACATTTGGACTAAATGGATAACAGCCTGTACGCcttctttataataataaactacttAGTGTTTTCCTCTCAGCAGTATCAAACAAGGTTCCTGTGGTGCTTCAGTAGTTTTCCAAGCAAAACTTCcctattttaaaatgatctgcATGGCATGAATGCTCTGGAAAACATGCGAGAGACCACATCTTTGATTGGAGCGTTTGTTTGGTAGAATAACATACGGCACATAtcaagtagaaaaaaaaaagaaagaaatacgcAAAAGAAACTTTGACACAAGTGTGCCTTGTGCCACGAAATGTCACTGCGATCCAATTCTGCAGTGTTCCATTATCCACTGCTTTAATCACTCAACTTTTCATTAAGGTGTTATAAGGGTTTATTcacttcttcctcttcctgttaactgaaagtcttCTGTCCCTCAGTCTCTTCTGAGGTTGTTCAGTCTTTCCTCCAGGTCAGCGTCTGCATCTGCCAGAGTTGGCTGTGGTTCTGCTTTCTTCCCAGCGGGTACTGAAAGACTTCCCCCAGTAGAAGGCAGACCTGACAGTTCATCTGAAAGATTCAAACCCAACTCATCCAGCACCTGAGAGACCACAGCATCACTTTCctcttcatcatcctcatctCCCATTGCATCATCAATTGCGTCATTCATCATCTCCTCCTTCATGTCCATTATTTCACTTTGGCGCTCAAACTCCATCATGATCTTCTGAATCTGTGGTAACTTCAACTGTCTGTTCATTGTGGCCATGGCTTTGGTGACTCCTTTCATTGCCTGTGCCATGCTGTTGTTTGACTTAAGGGTCTGAATTTTGAGACTAACTGCCTGGATATTGGCTCTCATCATGATGAACTTTTTAACATATCGTCTGGTGCGAACCAAGTCCTTGGCCATGATCTTGACTGCATCCATTTGCCCTTGTTTGGCCATTTTCTTAATGTCAGCTATGATTTTCTTCTCCTGTTGTTCCAGCCTCTGTCGCTCTCTGTCTAGATCTCTCATGGCTCTGTTCAGTGCTCTCTGGTTCTGTCTCAGCATCTCCTCCGGAGTTTTTCTCCGTCCAAATAAGAACTCCATCTTGAGTCTTCTGTTAAACGGTAAACTGCCCGAGGTTGAATAGCTGTCTGTCTCCGGTCCCGCGGGTCTgaaagtgttttgtgtttgtgtgtctcagtGGGAGCGGGGCTCAGTCTCCCTGTAACAGATCTGCAGCTCCCTCTTCCGCATCTCCACACTTCCTATGGAAAGTTCTTACGTCAGAGGATTTAAACACCCAGAC

Function

symbol description
chmp2a Predicted to be involved in several processes, including endosome transport via multivesicular body sorting pathway; exit from mitosis; and late endosome to vacuole transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A).

NR:

description
ribosomal protein L7a, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45491 True 1662 lncRNA 0.55 6 2130674 2134078

Neighbor

gene id symbol gene type direction distance location
LOC103026968 LOC108444266 coding upstream 462 2125620 ~ 2130212 (+)
calcoco2 NA coding upstream 13479 2108471 ~ 2117195 (+)
LOC103026481 stx4,LOC103026481,LOC108444263,LOC108274127,LOC106579303 coding upstream 23545 2099155 ~ 2107129 (+)
LOC103025124 si:dkey-220f10.4,LOC108444253,LOC107692044,LOC107660871,LOC107554063,LOC102785326 coding upstream 32844 2088557 ~ 2097830 (+)
arsg arsg coding upstream 56421 2066377 ~ 2074253 (+)
LOC103028296 LOC108444267 coding downstream 1118 2135196 ~ 2148906 (+)
srcap srcap,LOC107669484,LOC107706895,LOC107582813,LOC107552729,LOC102199900 coding downstream 18806 2152884 ~ 2177072 (+)
ttll6 ttll6 coding downstream 44101 2178179 ~ 2188201 (+)
LOC107197898 NA coding downstream 57964 2192042 ~ 2195665 (+)
LOC103029234 LOC108413420 coding downstream 62918 2196996 ~ 2219483 (+)
G33788 NA non-coding upstream 6501 2123887 ~ 2124173 (+)
G33754 snf8,LOC107692042,LOC107660854,LOC107734219 non-coding upstream 11144 2117567 ~ 2119530 (+)
G33748 NA non-coding upstream 42514 2087959 ~ 2088160 (+)
G33747 NA non-coding upstream 43143 2085643 ~ 2087531 (+)
G33737 NA non-coding upstream 100573 2028333 ~ 2030101 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding downstream 142690 2276768 ~ 2281249 (+)
G33875 NA non-coding downstream 199665 2333743 ~ 2334085 (+)
LOC111192349 NA non-coding downstream 261235 2395313 ~ 2477487 (+)
G33882 NA non-coding downstream 295866 2429944 ~ 2430202 (+)
G33950 dhx8,LOC107706906 non-coding downstream 494592 2628670 ~ 2635022 (+)
amz2 amz2 other upstream 73711 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 742655 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1138156 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1145293 983167 ~ 985381 (+)
LOC111192417 NA other upstream 1706203 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 1429952 3564030 ~ 3659132 (+)
G34309 NA other downstream 2036973 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2748478 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 3558444 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 4112568 6246646 ~ 6258050 (+)

Expression


Co-expression Network