G33804 (LOC108444266)


Basic Information

Item Value
gene id G33804
gene name LOC108444266
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2128267 ~ 2130172 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45517
CTTCAGTTACTCTGTCAACATTCTATCAATATATCATCTATACTGAACATACAAcactcaaacataaataataaaaaaataacattttcccTTATATACATCCTACACATTTGATGAAGCTAGACACAAAAATCACATGTTCAAGAAAAAAAGGTATGCATGTGGTGACAAGCCATTCatgccaaaacaaaaaaaatcaagtgacTACAGACTAAGATGAGGCATGGCTTTGgattttctattaaaatttTGTTGTACGAGGCACAAAGTTTATCATGACCATTCGCTTGACATGATGCTTGAAGATGTTCTTTTAGAAGCAGACAAGATTTTGAGACAAGTTAAAGTGGTGAAAGTTCCCATTTACAAGATCAGATATAAACAAGAATCATGACTGACCACTTGATAAACATTGAAAAATTATTGGATGTCCTTTTAGTCCATTTGTATGAACAGCTTTACAGATGTGCAGACCTCCAGCTGAAGCTTACAAACAAGAACTACTTGAGctaaaacaaaatcacacactGCTTATGCAACTCTTAGGTGgtgataacttttttttatggaatTTCTACTGCACTTACAAAAATGGAAACTTCTCACCATATGATTTGTTGACTCCAGACAACCATGCATTCTAAAGTTAAGAGAAATTAAGGATTTAAGTCATAAGCCTTCGTATCCTCACTTGAGGGTTCCGATTCACACTCTTCACTATACCTCCATGGTACACATACAGTGATACAGCCCGATATTCAAAAATCCATTGAGGCATTACATGCAAAAAATGCATCATATGTCCACAAGGTAATGCACATGAAACTTGTTGCTTAAAGCGGTGCCTGCAGTAATATCATTCATGTAAAAATAGACAGAGCAGGACCTGAACTATTTATATGGCAATCAATGCTGAACACTagacagtttttttaaacaaaatcacaGGGCATTCTGTGGATAGGATTATCCTAATGattaacaatataaataaatctgcaTCACTGCCATCTTCACTTATTGCCATTTaattacaaacacacaaacccaTGAAACCGATCAAGTATCCAGTAGCCTTAAAAGGGgccatctctttctttctgcagCATTCAACTTGGATATGTACATCTCAAGAAGACTGGCTTATTTCCGGCAGGTCCTGTGAGGAGtttgttttttctgattttctatACGGCAGCGACTTCGTTCATCAAGCCATGGCAGCTCGAAATTCATCATCAACCTCAGGATAAAATGATGACATCTCTGGCTCACTCTCCTGAACATTTATCTTTCTCTTCTCCATGCGCTGTTGGAGCCTTTGTAGCATACGCTGCTCCCGTATCCTTTGAATGTCCCATCTCTTCCTTCTCTTCTCATCCAGCTCCAGCTTTGCATGGCGTTTTAGAAAAACACCGTCATCAAGACTCTGCAGGTAGAAGAAAACCGTGCATATATGTTTAAG

Function

NR:

description
PREDICTED: male-specific lethal 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45517 True 1465 lncRNA 0.37 3 2128267 2130172

Neighbor

gene id symbol gene type direction distance location
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 7884 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 40700 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 62021 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 111092 1977614 ~ 2017175 (-)
xrcc6 xrcc6,LOC107709651,LOC107554059 coding downstream 223638 1898185 ~ 1904629 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding upstream 846 2131018 ~ 2134043 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 146585 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 494766 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1091175 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1210440 3340612 ~ 3380599 (-)
LOC111192348 NA non-coding downstream 45024 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 53661 2074335 ~ 2074606 (-)
G33732 NA non-coding downstream 151682 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 152159 1975829 ~ 1976108 (-)
G33693 LOC108413510,LOC108273944,LOC100698988 non-coding downstream 264755 1862786 ~ 1863512 (-)
G33833 NA non-coding upstream 61918 2192090 ~ 2192968 (-)
G33835 NA non-coding upstream 64115 2194287 ~ 2194607 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 156098 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 188436 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 203102 2333274 ~ 2334121 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 85964 2022071 ~ 2042303 (-)
G33675 NA other downstream 315645 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1726955 389434 ~ 401312 (-)
G33823 srcap other upstream 38851 2169023 ~ 2177059 (-)
G33836 LOC103393566,LOC105888730 other upstream 64585 2194757 ~ 2196095 (-)
G33904 NA other upstream 173090 2303262 ~ 2309329 (-)
G34046 NA other upstream 1050996 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1652953 3783125 ~ 3789192 (-)

Expression


Co-expression Network