G33823 (srcap)


Basic Information

Item Value
gene id G33823
gene name srcap
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2169023 ~ 2177059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45542
TTTTATTCAACTGACTTTTGTCATTTCAATCTTTCAAGTAAAACAATGTGGAATTACAAGGGAACATAAGGAATGTAACAAAATTAGAAGAgacaaaccaaataaaaaaaagaccaacACCATGTTTTACCCCTACCCCCCAAAACAAGTCTTTACTCCCAAAATGAGACAAAGACAGCATCTTACTGCCAAGGTtcagctgaaaagaaaaaaaaaattagaaggTTGTTGCAGGAGTATTTCCATTTAGTCTTGCCATAAAAAGGACCAAAAAAAGGGTGACAACGATTTACACGTAAggtgttttcaatttggttgcacttcaacaaaaaagaaaaatacacctCATGTGGTTTAGGATGGAAATATCTTTATTACACTttgaacattaaaaatgtttgaagCCCAAACGTCTTTCCTTAACAAGGCATACAAGGAGCCCCCTTCCATGTGGATCAACAGGCACTCTCACTTTGTCACACTGTTTGAGACTGTCTGACAAAAAAACCCCAGAAACAATGAGAAGTAGACCATATCGACTAATACTTTggaaaaggtgaaaaaaatgaGGTTGCCTCATATCTGTATTGCCAAAAAGCAAACAACAAGCAGACTTCAAGATTCATCACAAGCTCAAGAGCTGTACATACACATTGTGAGGTACCAGTAGAGAAGTCATTTGATTGAAAGGAATTAAAAACCTATCACAATGGGACATTATGTGAGATGTGCAAATGGAGAAATAATATGCAGGCTGGACTTAAAAGTAATGGACAGAACAAATTACAAGACAAGGAGGTCTGAGTAAAGACTAACTCCAGCATAGTGCAGCAAAACTCACATTTACAGACCTGCTCTCTTCTTCATACCCTGGAAGAAACCACAGAATATTCTTAATTTATCAACAGACTTGAAACAAACAATAGTCAACAGCTGGCAAACATTTTTGTCACAACCCAACTGTTTAAAAAGGGTATAACAATTGTACAGTCCCACTCAATTTTTTGAATGTAGCATAAATGATTTTTCGCAATCCCCTCTGCAGCACAAGTAAACTCTGTATAAAGGGTACAACCTAAGTGACCCATTTTAACACATATTTTTAGTATTCCAGTCTTTAAATGATTACAGTACATAGTGTGAACTAATAACTTTGCCCCTTGCCCAGCTTTCCAAAGTCCTTGGTGGTATGGTGAGGTATTGTCTATAAGAACATCACCGGGACTGCAATGCCACATTTTAACGGGTACCCTTTTTGTCCCATTTctgttgtgtatttatttatgctcCCTCTCCGCTCTAAAGATGGCTTAACTTGACATAGTTAGAATGCACTAGAAGTGAGTTCAGCTTGTCACAAAGTGCAACACACCAACAGTGTTAAAGAATGGCAAGTTATACGATTGATCCCCATTTGTCCAAACCCGTAAAACCTTTTCTCGTCACTGCAGTTCATTATTTCTACCAGCTTTCCGGTCCAATTCTTGTTCTGATCAAGTCTTGCGTTGCTGGGTGGTGGAGGAGCGGGTGTTGCTAGCTGGAGTACGTGCCTGAGCTGCTGCGAGTGCAGCTACACTCCGCAGCACTCTGTCAGGTGTTCCCTCACTAGATCCAGCACTTAGCTCTGGTCTCTCGTGCTTCTGTGAGCGTCTTTCTCTCCTACTTTCACGACCTCTACTTTCTCCTGTCTTTCTTTGcttgcttttttctttctccgtGTCACTGCCAGAGGAAGGAGCTCTTGAACGTAAGCGTGGTGGTCCAGTACTTCGTGAGCTTAGGCTGCGAGTGCACtgactgctgttgctgctgctccGGCTCCTGCTGCTGCCTGCACCTCTTCCACTGCTTATACTACTACAGGCACTGTGGCCTCTTGAAGACCTAGTCTCTCTGCGCTCATCCTCAACTTCTTCCttggtgtcagtttttttcttttcctctcttttgggctttttaatttcagtttcCAACGGAGGTACAAGGTTGCCTGGACGCTGCCGTGTAGAGCGGGCAACAGAGGGAGTTGTTTTAGTGGTGGACTGTGAAGAATCTGATGAATGAGTTGGGGTTTGCTGGCCACTAGCTGTTTTACTAACTAAATTTGTCTTTGGAGAGTCCTGTCCCGAGTTGCCCAAAGACTTGCTGCTTTTTTCAGTAGGAGACTGCTGTCCAATTGCTTTACTCTTTGGACTTGGGGTATCTGCGGCCCTTCCTCTCATAGCCAAGAGCTTAGCAGCAGCATTTAGAGCTGAGCATCGTTTGCCTAATACCTCAGGCTCAGGTGTGGTTATAGTACTCTGTGAAGCAGGCTGGAGCCCTGTGGATTTACGAGTTACCCTTACAGGAGTTGCTCCTCTGGACTCCCCTTCTACGTTTGCCTTAAGACTGTTTTTATCTGACCGCCTTTTTCTTCTCTTATCACCTTTGTCACCCCTGGTTTCCttctccaaacttttttgtgaTCGAGTAAAGCGTCTTTTGGGGCTGGAGGAGTCCTCAGAATCTGAGGACGACTGGGAGGAGTTGGAAGACTGCCTCCTGGCAGGTGTCATTGGTTCCTTATCAGTTCCTCTGTCTGTACTGTCTTTCTCAGAGTCTgtctctcgttttctctttACAGGTATCTTACTCTCTCCTGCCCTTTTTGAACGGGATGACCGAGTGCCACAAGAAGAAATGGAGGACGGAGAGGAGGACCGGACAGATTCTTGACTGCTTTGTCTTCTTATGCTTCTTTTCCTGCATGGTGTTCGGTTTTCTTGCTCTTCTGCCTGACGTTCCTCTTCTACAGGTTTATCAGTCCCGTCACTCTCAGAGGCAGTTTGCATCATTGCTTCTGAGATTGAAGGTGCAGGTAATCTTGAATCAGATATTTGACCATCTGACATATTATCCAATCTTCTCCTTTTAGCCAGAACCTGGGAACCATCACTGTCTACTTGCTCAGAATTTTCAGAGGGTCCTACTTCCATATCCTCTGTACTTTCCATCTTTTCGTCCACCTCGGATGCATTTGAGGCCTGCAGATTTTTAGTTTCACACTGCTTTGCAGGTGAGTGAGCATTGTGTGTGGTTTCCTCAATGGAAGCCTGTAAGGGCTGATGAGGAGGTTCTGTTATTAGGTTGGGTAATGCTGGGGATGGTACAGACTCTGAAGTGAGGCTGGACCCTAATTTTTCAGACTTGTCCTCAGTGGAAGCCAGTAGGGGCTGATGAGAAGGTTCTGTTGTTATTTGGTTGGGTAATGCTGGGGATGGTACAGACTCTGAAGTTAGGCTGGAACCTGATTTTTCAAGCTCATTCTGGGCTTCAGGAGGAGTATTAGGATTAAGCATAGGATGCAGTGAATCTGGTACTTCTGGTACATCAGATAGAGGAACAGGTGGCTCAGTCAGGCCAGATGCTGGTAATGTCGGAGAAGAGTTGTTGGCCACAGCTGGTTCAGATGAGAGCTCGTGTGATGGCTGTGAAGGCGTGGGTGAGGACTGCAGGATTGTAGTGGGACTAGGAGACATTTGTTCAGGGTCTGTGGCTGTCACTGTATTGTCAGGGGAAGCCTGTGCCACCAATTCAGTAGACATAGCTAAGACTTCTGGTCCACTCAAACTAGATTTTAACAACTGCTGGGGAGTAGAATCATTGCTTGTCACAGCTGCCGGTTGTGAAGGAGAAATAGTGACTTGACTGCTTTGACAGCTAGAACTGTCACTTGTTGTAGCAACAGGCTGTAGTGAAGGTGTTATATTGGTCTGACTGATGTTAGCTGTAGGAATGACTTCTGGTTGGCTTAGAGTGTTTAAAGAGTCAGAGTGTGGAATTGTGGTTTTCAGGGTGGAGTGTTCATTATTAGGTGTCAATTCAGTGTCTGTTAGCTTTATCTCGGATTCATCCAGTGTTTGAGCTGGAGAAATTAGTACATTGGACTGAGAGGTTTCAGATACAGTTTTTTGTGGTGGGGTGGAGTCAGATAATGCAGAGCTTCCTCCTGCACACTCAGGAACAGAGTGCAAATTTACAGGTTCAACACTAGAAACAGGAGAACTAATGTTTAGAGCGGAAAGGCTTTCCTGGGAAGGGCTTTCATGTAATGTTGTAGGACGCTCTTCTGCATCACCAGATTTACCACTGAGTGCAATATTTACAGTTGAATTCTTGCGAGGGCGACCCCTCTTTCGTTTCGGTGAGTGTGGTGGACTTTGTTCCTCACTCCTTGATCCCTGTACCACTGATTTCTCTTGTTCTGTGGTTTCTTGTGGCTTAGGTGCGGCCTTGCGAGGTCGACCTCTTTTGCGCTTCACAGGCGTAAGATTGGTTGCATTGGGATCAGAAGCAACAGTTGGACTTGTAGTGCTTTCCTGTTTCTTTGGTGACAGGGGAGTGCGCCGGTCTATCCCTCTGCCTCTACCCACGTACTGCTCTCCTAACTGAGCAGCCATACGAGACTCTGTCTCCAGGCGCCGGCGCACTGGTAAGTTGCGAAGGACAGGCATGTCTGGTGAATGCGTGGGGGAGTAAGGCTGGTACCCTCTCCCTGGGCTTGAGAGTGATGATGATGGGGAGACCTGCTCCTGCCCTTGCTGTATTGGGGGAGGAGATGTGGATGGTGACTTAGGAAGGGGCTTTTCTTTGAAAAGCTGACTTGCTTGATCAGGAGAGTGAGAAGTTGTATCTTGTACTGACTCCACCTGCTCTACCTCTTCTGATGAGCCTTCAGTGTGTATTCCTCCACTCCCGCTTGCTCCCCTCCTTCTCCGTCTTGGTTCTTTCTCTTCAACAACAGTAACCAGGCGTCCAGGAAGCTTCCTAAGGACCTTTGCAGATGGGGAATCCTCTGGAAGGCCTTTAAGGACTTCTCCGTCAGCAGTTTGACGTTTGCGCGGAGAACGAGGGTGTGAAGTCAGTGAGTGCTGACCATCCTGCTCCAGCAGCTGTTCTGGGGAGCAGATGGAGTCTGACGATATAGatgcccccctctctctctcgattGTATCCTGCTGAGGAGTCCCAGACTGTGACTCTGCAACAgactcttcctcttcttctttttgaaCTGGTGTCACTACAGAAAGGTGTCCAGTGGAGCCTCTCTCTAATGATGGAGGGGCCGCATCTGAAGGCACAGATTCTGAAGGAGAAAGGGGCTGTTGAAGTGGGGATGGAGCAGGTTTGGTCTTCAACACTAAATCTTGAGTTGAATGTTGAGCTTCTGAATCAGAGGCATCCTGATCAGTTTGTGGCTTCACAGGTTCTTCCTGCGTTGGTGCTGGAGAGGCCACAAGCTCTTTGATTGCCCCTCTCCCCCGTAGACCACTTCTTATTCTTTCAGGCACTTCTCTGGGCTGGGGGGACTTCAGGCTGGAGCTTGATCCAGAAGAGCGGCTCCCACCAGGTTCAGGGACCAGGGTCTCCACTTTCTTCCCTCTCTCCTTGTCTGGTGATGGATGTGTTATGGACACATCATCCATATTAGCCGGTGTCCCTCTAAGCCTACCACTGACACGTGTAGAAGGGGCACCTTTCTCCTTATGTTTGCGTGTGCGGCGAGTTGTAAGGTGCTCTTCAGGAGTGGGAGGCATGGAGTCCTCTTCATCATTATCAGATGACTGATGCAGTTTTAGGCCCTCCTCCTTTGCCTGATCTAGTCCTTTCCTTGCAGCTTCAACTTGCTCCTCTGCCTGTTTGAGTTCTTCTTTGCAAATATCTTCAAGTGAGGCCTCCAGGAAATTCATAGCATATCGCTCAATAGGGGTGAGCTGTTCAACTAAGGCTGCAATTTCCTGTTCAGCTTTGGAAAGTTCCTCCTCTTCCTGGTCTCTGCTTTCACCATCATCAAGTGGaatattttcattaaattcTGCTAGTTCAGCTACCTGTTCAGCTTTGGCTTGGGAAGCCGCTACTATGTCCTCTTCATCCTCAGCACGACATAAGGCCTGCTCTAAAATGTTGGTTTGCTGCTTATTGACGGCCTCTTCATCATCTGAGGGAAGAACAGTAGATTCTGTCTCCTTCTTCTCCCCCTCAGTCACATCAAACAGCTCTCTGATAGTTTGCTGTtttaaaaaaagcagtGGTGAAGTTTCCCCCTTCAATAGCCATATCTCCCAACATCCTCTTCTGATTAGCTTTTTTCAGGATATTTTCCTCCACAGTGCGTTCACTTATCAACCTGTAGATGTGAACATCTCTAGTTTGCCCAATACGATGGCAGCGATCTTGAGCTTGGGCATCCATAGTGGGGTTCCAGTCACTATCATAGAATACTACTGTATCAGCCCCTGTAAGGTTCACCCCCACACCACCACTACGGGTGGATAGGATGAAACAGAATATGCGGCGGTCTGCATTAAAGCGCTCCATCAGGGCCTGTCTCTGTTCCACTCGTGTGCTGCCATCCAGTCGTAAGTAAATGTGCCCATGGTAGTTGAGGAACTGTTCTAGCACATCAAGCATGCGGGTCATCTGTGTAAATATGAGCACTCTATGACCTCCAGTCTTCAGTTTTCGCAGCAGGAGGTGAAGAGTCTGCAATTACCACAGTCATACTGGATAAGTCTCAGGTCAGGAAAGTGGGTCCTCATATTGCATTGGACACGGTGCAGCACGTGCAATAGAGGCGAAACATGGGCAGACAGCATAGAGGAGAAAAGAGCCTGCTGGTGGCTGTGGGAGGGAGGAGGATGGCAGCAGTGCATGGTGATGGGCTTTGCCTCCACTGGAGGAATGACAAATGTAAACCTACAGGGGGG

Function

symbol description
srcap Predicted to enable ATP hydrolysis activity and histone binding activity. Predicted to be involved in histone exchange. Predicted to act upstream of or within carboxylic acid metabolic process. Predicted to be part of Swr1 complex. Human ortholog(s) of this gene implicated in Floating-Harbor syndrome. Orthologous to human SRCAP (Snf2 related CREBBP activator protein).

NR:

description
PREDICTED: helicase SRCAP isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45542 True 6752 TUCP 0.39 9 2169023 2177059

Neighbor

gene id symbol gene type direction distance location
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 34980 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 48640 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 81456 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 102777 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 151848 1977614 ~ 2017175 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 99698 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 447879 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1044288 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1163553 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 1205716 3382775 ~ 3390578 (-)
G33804 LOC108444266 non-coding downstream 38851 2128267 ~ 2130172 (-)
LOC111192348 NA non-coding downstream 85780 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 94417 2074335 ~ 2074606 (-)
G33732 NA non-coding downstream 192438 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 192915 1975829 ~ 1976108 (-)
G33833 NA non-coding upstream 15031 2192090 ~ 2192968 (-)
G33835 NA non-coding upstream 17228 2194287 ~ 2194607 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 109211 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 141549 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 156215 2333274 ~ 2334121 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 126720 2022071 ~ 2042303 (-)
G33675 NA other downstream 356401 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1767711 389434 ~ 401312 (-)
G33836 LOC103393566,LOC105888730 other upstream 17698 2194757 ~ 2196095 (-)
G33904 NA other upstream 126203 2303262 ~ 2309329 (-)
G34046 NA other upstream 1004109 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1606066 3783125 ~ 3789192 (-)
G34214 NA other upstream 1659562 3836621 ~ 3883469 (-)

Expression


Co-expression Network