G33833


Basic Information

Item Value
gene id G33833
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2192090 ~ 2192968 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45554
CTTCAGAAGCAGGGATCTCACCTTGGGGTCTCATCCAGGGGTACAACTCGGCTGGATACACGGCTGCGCTCTCCAGGCCATCGCTCAGGCAGCTCGCCTTCAACCCGCAGTCTCCGAACTGCTGGCTTAGATTCGGGTCCGGAAGAGGGTAAAGGTTTTGTCCATTAGACCTGTCGTGCTCCAGCAGGTCTCCGCTAGGCTCTGCGTACGGTCCTGCGCTCTGGGTGTGAGAGGCGTGCGCGTGAATATAAGGCGATGCGCCAAAAGAGTAAAGGTCCTGGAACTGCGCAGCGTGGTGGACAGCAGATTCTGCGCTGTGTCCATAAAGTACAGACGGCCTGCCCCCCACATCCCCCGCGTAGCCAGACACCTCATAGTAGCTGGGGCGAAGCGAGTCATTTCCTTTTAGTTTGCTGAAGATAGAACTGACGAAATAGGAGCTCATGCTTTTAGTTGGTTagttttatttcactttttcagAACTAGCTGATATTTCTTAGAGTACACCCTCCTTCTTTAGTGCGCCGTCAGTCATGCGCTCCATACAAGAACCCAAAATGAACAAGTTCGCCTGTAGATAGCACCGACCCCAAAATGTCGTACATATCCATGTCAGCTCGTTTTCGAATTGCAGATTGATGATGGGTCTAGTGAAGGGCGCTCATGAACTACCCCAACCACTCCACTCATACCCACTCCACTCATCCTTCTTCCATCAGAGGTGCGTGAAGATGCGCTACTCCTGCAAGATCATAGTCTGATCATACAGAGACaatgagggaaagaaagagagaaaaaacagagacagataaGAGacgatgtgagagagagaaggaaatgaAGGGAAAGAGGCGGAGGGAACAGACAGCgagacagaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45554 True 879 lncRNA 0.36 1 2192090 2192968

Neighbor

gene id symbol gene type direction distance location
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 58047 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 71707 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 104523 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 125844 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 174915 1977614 ~ 2017175 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 83789 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 431970 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1028379 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1147644 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 1189807 3382775 ~ 3390578 (-)
G33804 LOC108444266 non-coding downstream 61918 2128267 ~ 2130172 (-)
LOC111192348 NA non-coding downstream 108847 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 117484 2074335 ~ 2074606 (-)
G33732 NA non-coding downstream 215505 1976329 ~ 1976585 (-)
G33731 NA non-coding downstream 215982 1975829 ~ 1976108 (-)
G33835 NA non-coding upstream 1319 2194287 ~ 2194607 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 93302 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 125640 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 140306 2333274 ~ 2334121 (-)
G33910 NA non-coding upstream 169382 2362350 ~ 2367740 (-)
G33823 srcap other downstream 15031 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 149787 2022071 ~ 2042303 (-)
G33675 NA other downstream 379468 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1790778 389434 ~ 401312 (-)
G33836 LOC103393566,LOC105888730 other upstream 1789 2194757 ~ 2196095 (-)
G33904 NA other upstream 110294 2303262 ~ 2309329 (-)
G34046 NA other upstream 988200 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1590157 3783125 ~ 3789192 (-)
G34214 NA other upstream 1643653 3836621 ~ 3883469 (-)

Expression


Co-expression Network