G33836 (LOC103393566,LOC105888730)


Basic Information

Item Value
gene id G33836
gene name LOC103393566,LOC105888730
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2194757 ~ 2196095 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45557
tattattgttttcattattattatggttgttattattattattatggttgttattgttgttattgttattattaataataatattaatattaacattactCGCTTGTGATGCTACTGAAAACAGAAGATACCTCGTTACCAGGTACCACACTAACTATCTTTTCACTTTACCACAAAATGAACAACAGATTATAAGAGACAGTTAACATGCCCTGACCATTTATTTATCCATTctcacattaatatttatttttataattcaagGAAAGCATTAAGGCTTCATTATGTCCTTGAAAGAGCAGCTGCACTAGTGCTCAGTAGTGGAAACGTTTCATAATGTGTCCTCAAAATTAATGCACTGAATTTACATGATTCGTATCTGTATATGATTTTGACATGAACACAATATCAACAGTCTTTGCACAAcgtattttttcatgttttttattgtaccATTTCACGTACACCTATTACTGCAGACaattaaataacaattaaataaacgTTCGCGTTTGAAGCAGGACACATTGGGTGGGTTTACACATGTAAGTTTGATTAATCATTCCCTCATCAGGGGATTGTTCACCTCTCCActcccttatatatatatatgtatataaggtAGAGGAGGCAGAAGGTTACATGTCTCAAATACAATGTCCTACTACATTATATTGCTACGGTataattacattgcattacatggCAATTTCACAAATTAAACCGTTTTAAAACCACATTTTCCCGAAAATTTTCGACACAATTATCAGATGTCAGATACGCTGTCATTAGTGCCGAAATCGCTTATCACTTATATAGcaatatacatactatactgcTAATACAACTTGTAACTGTGTCATGAAAATGATTGTATGTctttaataacaaataaaaacagtgtcCTACAGTGCCAAAAATCTGATCCTTTCTTTAAAGAAACTGTCCAGTCAAGTAATCtggtaagtatatatatatatatatatatatatatatatatatacacgtcaCATCTTGTCTTTGACATTCATTTTCTTAAAGTGGCGTTTCCTTCTTTTCAGCTATGTGGGTTGCAGTGTCCTCTGCGCGCTGGCACCACTGTTTTTCGACTTCCTCTTGCTCATCTCTGCTGCTGGGGAACTTATCTCTGTTGTTCTCCTTCTTCCACTTCATCCTCCTGTTTTGAAACCAAATCTtcacctgtctctctgtcagcGCGAGTCCACGCGACACCTCCGCTCGCCTCCTGCGGCTCAGGTAGGGCCGGTACAGAAACTCCTTTTCCAGCTCCAGCGTCTGGAAGCGGCTGTACGTCTGTCTGCCTCGCCTCCTCCCCCCA

Function

NR:

description
PREDICTED: homeobox protein Hox-B8a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45557 True 1339 TUCP 0.30 1 2194757 2196095

Neighbor

gene id symbol gene type direction distance location
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 60714 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 74374 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 107190 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 128511 2056100 ~ 2066246 (-)
LOC103047336 LOC108444256 coding downstream 177582 1977614 ~ 2017175 (-)
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding upstream 80662 2276757 ~ 2282984 (-)
dhx8 dhx8,LOC107706906 coding upstream 428843 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 1025252 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1144517 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 1186680 3382775 ~ 3390578 (-)
G33835 NA non-coding downstream 150 2194287 ~ 2194607 (-)
G33833 NA non-coding downstream 1789 2192090 ~ 2192968 (-)
G33804 LOC108444266 non-coding downstream 64585 2128267 ~ 2130172 (-)
LOC111192348 NA non-coding downstream 111514 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 120151 2074335 ~ 2074606 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding upstream 90175 2286270 ~ 2287428 (-)
G33909 NA non-coding upstream 122513 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 137179 2333274 ~ 2334121 (-)
G33910 NA non-coding upstream 166255 2362350 ~ 2367740 (-)
G33939 NA non-coding upstream 319192 2515287 ~ 2544111 (-)
G33823 srcap other downstream 17698 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 152454 2022071 ~ 2042303 (-)
G33675 NA other downstream 382135 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1793445 389434 ~ 401312 (-)
G33904 NA other upstream 107167 2303262 ~ 2309329 (-)
G34046 NA other upstream 985073 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1587030 3783125 ~ 3789192 (-)
G34214 NA other upstream 1640526 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 2775603 4971698 ~ 4995913 (-)

Expression


Co-expression Network