G33853 (nbr1,LOC108413416,LOC108273956)


Basic Information

Item Value
gene id G33853
gene name nbr1,LOC108413416,LOC108273956
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2286270 ~ 2287428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45586
CCAGTgctaatattacaatatagtATCTACTCACCAGTGACTTGCTGCAGTGGGAACTGGGTTTCTGGCCTGAACTGGGCACCACCACAATGCTGCACCACACTCGGGGGCCAAACTGCACTCCGCAGTGTGCCAGACGCCAGTGGGAGGTGTAGGTGCCTTCCAGTATCGGTGCCACGAAAGCCACACTCACCACACCAACCTCTCCTGGCTTTAAAAAGGGAACTGCCACCTCTTTCTGCTCCCGAGACTCCAGTGCCAGATTTCCCCACATGAACTTTAGCTTGATAGAGAAATACACAGAGTCCACCTTGGTCTCAGAAGTCCAGTTGATGTTGCCAGTATTCCTCATCTTCCAGTACTTGATGAACTTGGTGCCAGGCTCCAGACATGTGCCGTCTGGTAGATTCTCATCCAGAAACAAGGCAGTCATTGTGGGCACCAAGGTGGAGCAGGAGACCTTGGGACCCCTGGTTTGAGTGCACAGAGCATTGTGAGTACAGCTTTGATTCagcttctgtctttttcttgaagctcaaagcaaaaaaaatgttttttaaaaggagGCTATACAATAAAGGCAGCAGGTGCATTTTGAGGTAGTTCCATCCACTTGCCAGCGATAAACGCAACTATAACAGACAATGAGATAATCTTGATAATGATTGTTCTGGGCTGGGTAGGTAGGTCACCCAGCCCTGACCCCTCTCACTATGGCCCTTACTCTGGACTGGAGGCCTGAGGGTCTGAGCCCGGGGCTGGAACTGGACCAGGTGCAGGGGCAGGAGCAGGAGCAGAAGCAGGACCGAGACCTGTGCTGCTAGTGCCATTGGTGGCTCCACTCCACAGCAGACCTCTCTTCTCCAGCCGCAGCTTTTTCTTGATCTCCTTCACCTCAGCTTTCAGCTGTCTCCGCTCGGCTTTTAGACGCTGTCTCTCAGCCTTACGCACAGTCCGGTCTCCGCGCCTCA

Function

symbol description
nbr1 Enables ubiquitin binding activity. Involved in macroautophagy. Located in cytosol and nuclear body. Part of receptor complex. Colocalizes with mitochondrion.

NR:

description
PREDICTED: carnitine O-acetyltransferase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45586 True 971 lncRNA 0.52 2 2286270 2287428

Neighbor

gene id symbol gene type direction distance location
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 3286 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 152227 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 165887 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 198703 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 220024 2056100 ~ 2066246 (-)
dhx8 dhx8,LOC107706906 coding upstream 337510 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 933919 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 1053184 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 1095347 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 1116519 3403947 ~ 3532389 (-)
G33835 NA non-coding downstream 91663 2194287 ~ 2194607 (-)
G33833 NA non-coding downstream 93302 2192090 ~ 2192968 (-)
G33804 LOC108444266 non-coding downstream 156098 2128267 ~ 2130172 (-)
LOC111192348 NA non-coding downstream 203027 2080975 ~ 2083243 (-)
G33759 NA non-coding downstream 211664 2074335 ~ 2074606 (-)
G33909 NA non-coding upstream 31180 2318608 ~ 2318897 (-)
G33911 NA non-coding upstream 45846 2333274 ~ 2334121 (-)
G33910 NA non-coding upstream 74922 2362350 ~ 2367740 (-)
G33939 NA non-coding upstream 227859 2515287 ~ 2544111 (-)
G33944 etv4,LOC107743788 non-coding upstream 286959 2574387 ~ 2603189 (-)
G33836 LOC103393566,LOC105888730 other downstream 90175 2194757 ~ 2196095 (-)
G33823 srcap other downstream 109211 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 243967 2022071 ~ 2042303 (-)
G33675 NA other downstream 473648 1810586 ~ 1812622 (-)
LOC111192416 NA other downstream 1884958 389434 ~ 401312 (-)
G33904 NA other upstream 15834 2303262 ~ 2309329 (-)
G34046 NA other upstream 893740 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1495697 3783125 ~ 3789192 (-)
G34214 NA other upstream 1549193 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 2684270 4971698 ~ 4995913 (-)

Expression


Co-expression Network