G33939


Basic Information

Item Value
gene id G33939
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2515287 ~ 2544111 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45689
ttttttttaaaggatttattcttttttatgtgTGGTTTTCAATATGCAACATCTGTGTTTCATCGATTTCagtcatataaaaaaagagaaataaaaatcaaaaacatttgaatgacagaaaaaaagtatatcCTAAGAACATCAACTTGACAGCACAACttacaaaaaaacagacatgtGACATTGAGCCTCTCTATTGCTTCAGCACCAGCAGAGAGATCCTGAGTGGGTCTTTTTTCGTATTTTGTTGGAACTACAACAGGTGGTTCTGACCAAGCTTCTGAAACCACCACTGTGGTGTATTAAGCCTGTCCAGCAAATGCATATGTGAGCAACGTTGTGACGTCATTACCATCGGTCAAAGCCGTTAATCTCGGATTTAAAGAGTTAATTATCTACATTCTTATCTACATCTGCATTATCTGATGTCACTTTTTGTCAATatttaacccataagagcccagactCAGTCCTGaatatttgttcaaaataaCTGAATCAggtatttactgtttttttttttcatactgtgatacattcacatatttatttttatttttaacttatatTTTATCATTGCATTCTAAAAATGGGGTTAGAACTGCTGGTAAACTGTAATATATAACCTGTTATTAGAGTGTTTGAAtggataaagtaaaaaaaaaaacttgtaaaagaAGTTAGTTTTATCTTAAGCACTAACCCAGAacacctacattctgtaaatgtaaatgaggtCACATTATCACACTAACTGAAGGACAAAGAGCTGTAAGCAACTTTTCCACATCTTTTAAAGGGTTTGTGATGTCACACACGTCAGcatgggctcttttgggttaatCTGATTTTATGGACGAGCTGGGAAtcccgaaaaaaaaaagtccataaAACTGCAGTTGGAACGTGTTAAGAGATTTATGGGAAACTTTGACATCATATTAATTGCACACTGTATCTGTGGCTTCACCATAACAGGTATCCCAGGAGGCActttggtatgtgtgtgtgaatgtctcTGTACATGGAGGTGGAGGTCAGGGTCATCTACTCTGAACTGGGAGAAGCTGCAGAATCCAGCTCATCTGCTTCCAGGTCATGAGGGGAAGCAGGCTGACCTCCTTTCACCCTCTTCCATTTCATGCGTCTGTTCTGGAACCACACCTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45689 True 1170 lncRNA 0.37 2 2515287 2544111

Neighbor

gene id symbol gene type direction distance location
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 232303 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 381244 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 394904 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 427720 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 449041 2056100 ~ 2066246 (-)
dhx8 dhx8,LOC107706906 coding upstream 80827 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 677236 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 796501 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 838664 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 859836 3403947 ~ 3532389 (-)
G33910 NA non-coding downstream 147547 2362350 ~ 2367740 (-)
G33911 NA non-coding downstream 181166 2333274 ~ 2334121 (-)
G33909 NA non-coding downstream 196390 2318608 ~ 2318897 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding downstream 227859 2286270 ~ 2287428 (-)
G33835 NA non-coding downstream 320680 2194287 ~ 2194607 (-)
G33944 etv4,LOC107743788 non-coding upstream 30276 2574387 ~ 2603189 (-)
G34036 NA non-coding upstream 516258 3060369 ~ 3085406 (-)
LOC111192350 NA non-coding upstream 563091 3107202 ~ 3189436 (-)
G34101 NA non-coding upstream 847518 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 1184531 3728642 ~ 3728960 (-)
G33904 NA other downstream 205958 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 319192 2194757 ~ 2196095 (-)
G33823 srcap other downstream 338228 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 472984 2022071 ~ 2042303 (-)
G33675 NA other downstream 702665 1810586 ~ 1812622 (-)
G34046 NA other upstream 637057 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1239014 3783125 ~ 3789192 (-)
G34214 NA other upstream 1292510 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 2427587 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 2711508 5255619 ~ 5362486 (-)

Expression


Co-expression Network