G33944 (etv4,LOC107743788)


Basic Information

Item Value
gene id G33944
gene name etv4,LOC107743788
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2574387 ~ 2603189 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45696
CTGGCGTAAAGGCACTGCTCTCCACTGGGGTAGCTGAAGCTCTGCTTGTGGCTGCATGACTGGCTGGGGTCTGAGCCGGGGCTCTGGGGCTCTTTCTTAATCTTCACCGGCGGGCTGTGGAATGCCACTGAGTTTTCTGAGTGAAAGTCAGGAACAAACTGCTCATCGCTATCAGGAACTTGAGCTTCTGTCAGCCATGTCTCCTGAAGCTGACTTAAATCCTGAAAGAGATCTTCGGATTCCTGAGGGGGTAATTCGGTGTCCATGTATTTCCTTTTTGCtgccatcaacagtctatttagGGGCCCATTTCCTTGCGACCTATTAGCTAAAGTATAAGGCACTTGCTGGTCCAGATATCCATCCATCTTATAATCCATGCGTTAACCGTCCGTGGTCATTTGGACTGTGCTGAGTGGGGTCCGCGCAGTcccAAAACTTTTTTGCACTGTTGATTCTGCTCAGAGCTGTTTCTCTCTCGCTTGTCGTATGTTCGCTCCTCTCGCAGGAACTTCGTGATTGGTGGATTCACTCTTTCAGGAGCTCAGATTTCTCTCAGTCTTTGTCCACATGAATGGTCTTACTTATGAATGAAATCTCGGCTCCTCCTCTGCACCAATCAGAGCGCGAACTGTACCAGACCATAGCAACGATGGGCGGGGCTTGCGCCGCGGAGACCAATCCCCTGCGCCGGGACCCCGAGAG
>TU45697
CTGGCGTAAAGGCACTGCTCTCCACTGGGGTAGCTGAAGCTCTGCTTGTGGCTGCATGACTGGCTGGGGTCTGAGCCGGGGCTCTGGGGCTCTTTCTTAATCTTCACCGGCGGGCTGTGGAATGCCACTGAGTTTTCTGAGTGAAAGTCAGGAACAAACTGCTCATCGCTATCAGGAACTTGAGCTTCTGTCAGCCATGTCTCCTGAAGCTGACTTAAATCCTGAAAGAGATCTTCGGATTCCTGAGGGGGTAATTCGGTGTCCATGTATTTCCTTTTTGCtgccatcaacagtctatttagGGGCCCATTTCCTTGCGACCTATTAGCTAAAGTATAAGGCACTTGCTGGTCCAGATATCCATCCATCTTATAATCCATGCGTTAACCGTCCGTGGTCATTTGGACTGTGCTGAGTGGGGTCCGCGCAGTCTGCAGGGAGAGGGAAGAGAGGGGCACGAGAGGCAGCAGGAGTTGTGAATGGAGCCGCGAGAAAGCTGCATACGTAATGAGCTCCATTCACTAAAACGCAGACTGGCCCACAGCGCgcgcgcaaacacacacaaacaggcaCACGCTCA

Function

symbol description
etv4 Enables sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within limb morphogenesis and pronephric nephron tubule epithelial cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including fin; head; mesoderm; nervous system; and neural keel. Orthologous to human ETV4 (ETS variant transcription factor 4).

NR:

description
PREDICTED: ETS translocation variant 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45696 True 705 lncRNA 0.48 6 2574387 2603189
TU45697 False 580 lncRNA 0.53 6 2575033 2603189

Neighbor

gene id symbol gene type direction distance location
psme3 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 coding downstream 291403 2276757 ~ 2282984 (-)
chmp2a chmp2a,bc2,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 440344 2131018 ~ 2134043 (-)
snf8 snf8,LOC107692042,LOC107734219,LOC107554070 coding downstream 454004 2117540 ~ 2120383 (-)
LOC103023976 snx11,LOC103023976,LOC108444262,LOC105888804 coding downstream 486820 2074630 ~ 2087567 (-)
LOC103022929 slc16a6,LOC108444260 coding downstream 508141 2056100 ~ 2066246 (-)
dhx8 dhx8,LOC107706906 coding upstream 21749 2624938 ~ 2637751 (-)
LOC111192418 NA coding upstream 618158 3221347 ~ 3222998 (-)
ogfod3 ogfod3,LOC106959269 coding upstream 737423 3340612 ~ 3380599 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding upstream 779586 3382775 ~ 3390578 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding upstream 800758 3403947 ~ 3532389 (-)
G33939 NA non-coding downstream 30276 2515287 ~ 2544111 (-)
G33910 NA non-coding downstream 206647 2362350 ~ 2367740 (-)
G33911 NA non-coding downstream 240266 2333274 ~ 2334121 (-)
G33909 NA non-coding downstream 255490 2318608 ~ 2318897 (-)
G33853 nbr1,LOC108413416,LOC108273956 non-coding downstream 286959 2286270 ~ 2287428 (-)
G34036 NA non-coding upstream 457180 3060369 ~ 3085406 (-)
LOC111192350 NA non-coding upstream 504013 3107202 ~ 3189436 (-)
G34101 NA non-coding upstream 788440 3391629 ~ 3399113 (-)
G34159 NA non-coding upstream 1125453 3728642 ~ 3728960 (-)
G34166 pnpo non-coding upstream 1174711 3777900 ~ 3781741 (-)
G33904 NA other downstream 265058 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 378292 2194757 ~ 2196095 (-)
G33823 srcap other downstream 397328 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 532084 2022071 ~ 2042303 (-)
G33675 NA other downstream 761765 1810586 ~ 1812622 (-)
G34046 NA other upstream 577979 3181168 ~ 3194377 (-)
prr15l prr15l other upstream 1179936 3783125 ~ 3789192 (-)
G34214 NA other upstream 1233432 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 2368509 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 2652430 5255619 ~ 5362486 (-)

Expression


Co-expression Network