G33959


Basic Information

Item Value
gene id G33959
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 2760908 ~ 2761515 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45720
TGCTATAGATCTAGTTGCTATAGATCTGGTTGCTGTAGATCTGGTTGCTCTAGATCTGGTTGCTGTAGATCTGGTTGCTGTAGATCTGGATGCTGTAGATCTGTTTGCTGTAGATCTGTTTGCTGTAGATGTAATTGCTGTAGATCTAGTTGCAGTAGATCTGGATGCTGTAGATCTGGTTGCTGTAGATCTAGTTGTTTTAGATCTGGTTGCTGTAGATCTAGTTGTTTTAGATCTGGTTGCTGTAGATCTGTTTCCTGTAGATGTAATTGCTGTAGATCTGTTTGCTGTAAATCTGGTTGCTGTAGAGCTGGTTGCTGTAGATCTGGTTGCTGTAGATCTGGTTGCTGTAGATCTGGTTGCTGTAGATCTGGTTGCTGTAGATCTGGATGCTGTAGATCTGGATGCTGTAGATCTGTTTGCTGTAGATGTAATTGCTGTAGATCTGGTTGCTGTAGATCTAGTTGCAGTAGATCTGGATGCTGTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45720 True 489 lncRNA 0.42 2 2760908 2761515

Neighbor

gene id symbol gene type direction distance location
spata20 spata20 coding upstream 62872 2639255 ~ 2698036 (+)
etv4 etv4,LOC107706904 coding upstream 141537 2574538 ~ 2619371 (+)
meox1 meox1,LOC107577625 coding upstream 244453 2505355 ~ 2516455 (+)
sost LOC108414158 coding upstream 370879 2384374 ~ 2390029 (+)
dusp3 dusp3,dusp3a,LOC107669488,LOC107552769,LOC107582744,LOC107666929 coding upstream 393109 2352013 ~ 2367799 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding downstream 364867 3126382 ~ 3182179 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding downstream 561449 3322964 ~ 3342690 (+)
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding downstream 630793 3392308 ~ 3399142 (+)
tbx21 tbx21 coding downstream 966901 3728416 ~ 3746114 (+)
pnpo pnpo coding downstream 1016227 3777742 ~ 3781778 (+)
G33950 dhx8,LOC107706906 non-coding upstream 125886 2628670 ~ 2635022 (+)
LOC111192349 NA non-coding upstream 283421 2395313 ~ 2477487 (+)
G33882 NA non-coding upstream 330706 2429944 ~ 2430202 (+)
G33875 NA non-coding upstream 426823 2333743 ~ 2334085 (+)
G33849 psme3,LOC107582747,LOC107727296,LOC107669474,LOC107706898,LOC107666924 non-coding upstream 479659 2276768 ~ 2281249 (+)
G33987 NA non-coding downstream 455489 3217004 ~ 3218342 (+)
G34073 NA non-coding downstream 558199 3319714 ~ 3319922 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding downstream 621473 3382988 ~ 3390577 (+)
G34105 NA non-coding downstream 783938 3545453 ~ 3557491 (+)
G34177 NA non-coding downstream 1041464 3802979 ~ 3804577 (+)
amz2 amz2 other upstream 703945 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 1372889 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 1768390 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 1775527 983167 ~ 985381 (+)
LOC111192417 NA other upstream 2336437 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 802515 3564030 ~ 3659132 (+)
G34309 NA other downstream 1409536 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 2121041 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2931007 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 3485131 6246646 ~ 6258050 (+)

Expression


Co-expression Network