G33987


Basic Information

Item Value
gene id G33987
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3217004 ~ 3218342 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45751
GAACAGGGCTGAAAACTAATTTGTTTGTTCTGTCACATCACCCTCCACCCCTCCTGGATTGCACAACGTGGGCAATCGGGAAAGGTAATCTGCCATGATGTTTTGTCGTCCGCTTCTATGACGAATTCGAAACACAAAAGGCTGCAGCGCCAAGTACCACCTAGTGATGCATAATAACGAAGACTCTCCAAGGCCCATTTAATAGCAAGTGCTTCCTTTTCCACTGTGGAATATCTTGTCTCTCTCTGCAACAGCTTCCGACTGAGGTACAACACAGGTTGTTCTTGACCTTCAGTACCTTGCAGTAAGACAGCACCAATTCCAACTGCTGAAGCGTCAACTTGCACCGTGAATGGCCTGGAAAAGTTTGGGCTGATCAGAACTGGTTTGGAGCACAGTGCTTCCTTAAGAGCTGTGAAGGATCGTTCACAATCGTCTGTCCATCGAACTGGATTCTTTTCACACTTGAGGGTCAGTCCAGTAAGTGGGGCAGCAATAGTGGCAAATTGGGGAATGAGTCGACGGTACCAGCCAACCAAGCCAAGGAAAGAGCGTACCTGTTTCTTGGTGTGGGGACGAGAACTTTTCCTAATGGCTTCCACCTTGTCCACTTGTGGTTGGATCAAGCCCCTCCCCACCTGATATCCAAGGTACTGGGTTTCCAACTGACCCCACTTACACTTGTTCACATTAAGTGTCAACCCAGCTTCAGCAATGTGTTCAAGGACAGCGTCAACATGCTTAAGATGTTCATCCCAACTCTTGCTGAAGATCACCACATCGTCAAGGTATGCGGAGCAGTAATCTTCACAGCCTCTTAAAACACGGTCCATTAATCTTTGAAATGTCGCTGGAGCACCATGTAGTCCGAAGGGCATAACAGTGAACTGGAAGAGCCCCAGTGGTGTTCGGAATGCTGTATATTCCCGAGATTCCTTAGCCAAAGGAACCTGCCAATAACCTTTGCATAGGTCAAGGGTTGTAATGAACTGAGCATGCCCAAGCCTTTCCAACAGGTCATCAATTCGTGGCATTGGGTATGAATCAAACCTTGAAACAGCGTTGATCTTCCTGAAATCAATGCACACCCGTAGAGACCCATCAGGCTTTGGAACAGTCACTATTGGGCTACACCATTCACTTTCAGAGGGCTCAATGACCCCTAGATCCAGCATCGTCTGAATCTCAGCCTTAAGAGGTTCAAGCAGCCTTTCAGGTACTCTATAAGGTCTTTGCCGGATTGGACTGTCATCTTTAAGA
>TU45752
GAACAGGGCTGAAAACTAATTTGTTTGTTCTGTCACATCACCCTCCACCCCTCCTGGATTGCACAACGTGGGCAATCGGGAAAGGTAATCTGCCATGATGTTTTGTCGTCCGCTTCTATGACGAATTCGAAACACAAAAGGCTGCAGCGCCAAGTACCACCTAGTGATGCCAGATAATAACGAAGACTCTCCAAGGCCCATTTAATAGCAAGTGCTTCCTTTTCCACTGTGGAATATCTTGTCTCTCTCTGCAACAGCTTCCGACTGAGGTACAACACAGGTTGTTCTTGACCTTCAGTACCTTGCAGTAAGACAGCACCAATTCCAACTGCTGAAGCGTCAACTTGCACCGTGAATGGCCTGGAAAAGTTTGGGCTGATCAGAACTGGTTTGGAGCACAGTGCTTCCTTAAGAGCTGTGAAGGATCGTTCACAATCGTCTGTCCATCGAACTGGATTCTTTTCACACTTGAGGGTCAGTCCAGTAAGTGGGGCAGCAATAGTGGCAAATTGGGGAATGAGTCGACGGTACCAGCCAACCAAGCCAAGGAAAGAGCGTACCTGTTTCTTGGTGTGGGGACGAGAACTTTTCCTAATGGCTTCCACCTTGTCCACTTGTGGTTGGATCAAGCCCCTCCCCACCTGATATCCAAGGTACTGGGTTTCCAACTGACCCCACTTACACTTGTTCACATTAAGTGTCAACCCAGCTTCAGCAATGTGTTCAAGGACAGCGTCAACATGCTTAAGATGTTCATCCCAACTCTTGCTGAAGATCACCACATCGTCAAGGTATGCGGAGCAGTAATCTTCACAGCCTCTTAAAACACGGTCCATTAATCTTTGAAATGTCGCTGGAGCACCATGTAGTCCGAAGGGCATAACAGTGAACTGGAAGAGCCCCAGTGGTGTTCGGAATGCTGTATATTCCCGAGATTCCTTAGCCAAAGGAACCTGCCAATAACCTTTGCATAGGTCAAGGGTTGTAATGAACTGAGCATGCCCAAGCCTTTCCAACAGGTCATCAATTCGTGGCATTGGGTATGAATCAAACCTTGAAACAGCGTTGATCTTCCTGAAATCAATGCACACCCGTAGAGACCCATCAGGCTTTGGAACAGTCACTATTGGGCTACACCATTCACTTTCAGAGGGCTCAATGACCCCTAGATCCAGCATCGTCTGAATCTCAGCCTTAAGAGGTTCAAGCAGCCTTTCAGGTACTCTATAAGGTCTTTGCCGGATTGGACTGTCATCTTTAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45751 False 1260 lncRNA 0.48 2 3217004 3218342
TU45752 True 1263 lncRNA 0.48 2 3217004 3218342

Neighbor

gene id symbol gene type direction distance location
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding upstream 34825 3126382 ~ 3182179 (+)
cacna1g cacna1g coding upstream 147173 2730484 ~ 3069831 (+)
spata20 spata20 coding upstream 518968 2639255 ~ 2698036 (+)
etv4 etv4,LOC107706904 coding upstream 597633 2574538 ~ 2619371 (+)
meox1 meox1,LOC107577625 coding upstream 700549 2505355 ~ 2516455 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding downstream 104622 3322964 ~ 3342690 (+)
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding downstream 173966 3392308 ~ 3399142 (+)
tbx21 tbx21 coding downstream 510074 3728416 ~ 3746114 (+)
pnpo pnpo coding downstream 559400 3777742 ~ 3781778 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 575533 3793875 ~ 3801538 (+)
G33959 NA non-coding upstream 455489 2760908 ~ 2761515 (+)
G33950 dhx8,LOC107706906 non-coding upstream 581982 2628670 ~ 2635022 (+)
LOC111192349 NA non-coding upstream 739517 2395313 ~ 2477487 (+)
G33882 NA non-coding upstream 786802 2429944 ~ 2430202 (+)
G33875 NA non-coding upstream 882919 2333743 ~ 2334085 (+)
G34073 NA non-coding downstream 101372 3319714 ~ 3319922 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding downstream 164646 3382988 ~ 3390577 (+)
G34105 NA non-coding downstream 327111 3545453 ~ 3557491 (+)
G34177 NA non-coding downstream 584637 3802979 ~ 3804577 (+)
LOC103040174 NA non-coding downstream 635103 3853445 ~ 3861449 (+)
amz2 amz2 other upstream 1160041 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 1828985 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2224486 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2231623 983167 ~ 985381 (+)
LOC111192417 NA other upstream 2792533 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 345688 3564030 ~ 3659132 (+)
G34309 NA other downstream 952709 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1664214 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2474180 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 3028304 6246646 ~ 6258050 (+)

Expression


Co-expression Network