G50972


Basic Information

Item Value
gene id G50972
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1104628 ~ 1105292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU58042
ATATATTAAATTAAACAAATATACTTTATTTAATCTCACTTTATTAACCAATGTCTTTGATCCAATTCAACCATACTAATAAGCAAAAATGACTTTAGATAAACATCACATCTGTGATCAGCCTGAAGCTTATTCATTTCACTTTTGGTGTGAAAGGGCCTTTTCATTTGCCAAAAATAGAACTTGTTAATTGTAATTAAAAAACAAACAAGCAAGCCCAGCCCAGGTGAAACGTAATGCAAAAGTAATATAATGCATTACTTTCCATAAAAAGTAACTAAGTAATGTAATTAGTTACTTTTTTAGAGAGTAACGCAATATTTGTTAATAACAACAAAAAAAAGTTCTATTTTTTTGGTAAAATTTAAGGCCCTTTCACACCAAAAGTGAAATGAATAAGCCTCAGGCGGAAGGAAATGCATATTTACACCTGTACAATAGAGGGCGCAGCTCAAACAAACCTTTCAGCTGTGCTGCCATTCTGGACTGAAGAAGAATAGGATACACACTAGGAAGTTCAACACTCTTATTTCTAAATCTAATATAAAGTAATTTTTGCTTATTAGTATGGTTGAATTAGATCATTGAAGGTCAGCAGGAAAGACGTTGGTTAATAAAAAGTGAGATTAAATACATAAAGTATATTTGTGTAATTTAATATAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58042 True 665 lncRNA 0.30 1 1104628 1105292

Neighbor

gene id symbol gene type direction distance location
CI01000009_01034561_01035452 KLF12 coding upstream 68900 1034561 ~ 1035728 (+)
CI01000009_00920570_00955979 TBC1D4 coding upstream 148054 920428 ~ 956574 (+)
CI01000009_00913995_00916434 COMMD6 coding upstream 188063 913995 ~ 916565 (+)
CI01000009_00852319_00853083 CX45.6 coding upstream 251167 851242 ~ 853461 (+)
CI01000009_00805606_00808374 NA coding upstream 296224 804904 ~ 808404 (+)
CI01000009_01110684_01111118 NA coding downstream 5392 1110684 ~ 1111601 (+)
CI01000009_01183737_01206031 NA coding downstream 76799 1182091 ~ 1206857 (+)
CI01000009_01219880_01224537 NA coding downstream 114345 1219637 ~ 1224869 (+)
CI01000009_01351236_01380055 CLYBL coding downstream 245944 1351236 ~ 1380285 (+)
CI01000009_01402330_01407372 ZIC2A, ZIC2 coding downstream 295769 1401061 ~ 1407755 (+)
G50951 NA non-coding upstream 144 1103278 ~ 1104484 (+)
G51031 NA non-coding upstream 103406 1000996 ~ 1001222 (+)
G51028 NA non-coding upstream 108356 996044 ~ 996272 (+)
G51017 NA non-coding upstream 130669 973711 ~ 973959 (+)
G50933 NA non-coding upstream 195647 905332 ~ 908981 (+)
G50961 NA non-coding downstream 106258 1211550 ~ 1217229 (+)
G51036 NA non-coding downstream 179568 1284860 ~ 1285420 (+)
G51039 NA non-coding downstream 182908 1288200 ~ 1288672 (+)
G51041 NA non-coding downstream 185251 1290543 ~ 1290776 (+)
G51043 NA non-coding downstream 198307 1303599 ~ 1304068 (+)
G50920 NA other upstream 334395 769841 ~ 770233 (+)
CI01000009_00094836_00095813 NA other upstream 1008841 94371 ~ 97230 (+)
CI01000009_01431700_01434463 NA other downstream 317555 1429873 ~ 1435328 (+)
G51122 NA other downstream 574854 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 788943 1897343 ~ 1919516 (+)
G51274 NA other downstream 1149807 2255099 ~ 2350486 (+)
G51529 NA other downstream 1956741 3062033 ~ 3062587 (+)

Expression


Co-expression Network