G34105


Basic Information

Item Value
gene id G34105
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3545453 ~ 3557491 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45899
TGTTTATTTCCATTATATGCACATCCATTACATATACAATGGAAAATATGGAAAGATTTTATTCCCAAAATATTAACTCTCTTTCAGTCATTAAGGAGTTAaaagtttagtaaaaaaaaaaaaaaaaatctaaaacacacatcaaatccaaatacacacacaaaatatggtCCTTAAAGGCTTGCAAGGTATATGTTGAACAGTACATTCAGTGTATGTGGTTCTTTTCTGAAATAAGAGGCACAGAATTTAAACAATGGAAACAAAATCCATGttattttaatggatttaataCATAAATTGAATCATTGCAAGCTGAACAATAAAAGGCTGCTGAAAGCTTACGAAACCTTAAGGCCTTCTAACACCCATCCAAACGCTTGAGAAAAAGGCTAAAGATGGGCGTGCTGCATATTTACATTCTTGCTGAGCAAGAACATTATACAGAATATGGAAGAATAAACTCACAAGCAAGAAACAGCGGTTTTGAAAAAGATCAAACTGTAAATGCCTGAAGTGTTTTCAGTCATGAAAGTAATGAGGTTACGGATAATGAATTACCACATTCAAATCCCCTTCAACAGAGCAATACGCCAGGGATGGCCTGGCTGACTTGGCAACAACGTGTAGTGGAACACCACTCCTGATTTTTACACTGAGGGTTGTTCCAGACACAATATCATTTTCACTCAATACTTCTTACTTATCTGATTTTTCAGTATGAGAACACTGTCAACGCCAATGCCCTTGTATAGGACAACATAACACCATCACCTCACATGAACCCAAGGAGGGTGCTCTGATCTGGCCTCTGAATATGGTCCTCTTTTCTTCTAAGCACTGGTTATAGATAGCTGATCTATTTGTGACTCCGACAGAGTGTGGAGAGGATGAAACGGATACAGTTCCCTTGAACATGACTAGAACGTGACCTAAAACCAAGGTTAATAGCGTCTTAACACACATGGACCAACATCGATTTTGCTTCATATAGTCGTACACATACACAGTCTTTCACAGCTTCTACTGTGAATGATGAAACCTCCTTGTTCCATGTAGGAGTAACTTTAACTGGAACTCTCCTACAAGACAGAAATGCTACTCTGGAAGGTCGGGAGATCCTCACCAACCCAGGAGcttagaatccaagatggctgtaCAGCACGTCaactaatatatgtaaatgtagtAGTATTGTACAGAATATTAGCACTTCTATCTAGTATTGCATTAATAAATCAGTGGTACACACAGCACTCCCCAACTGTCCACTGTCTACATAATAATGTGTCCAATGCTAACAATGATAATTTGCTAGCTAATTTTTTTCATGCTTAACGCCCCTGTTTAACTCTGACATTCGACATCCAAGGTAAATCAAATTCTGGATTATTAAAGAATAGCTTAATCTGACCACCCAATTTCAATCACTAAAAAAAGTGATCTAGCTATGTTGCTTCATCCAAAAACAGCACGTTTTGAGCTTTTTCCCAACCGAAGGTGAATCATTTGACACTAATTGCTTAGTCAACATTATTAATtactaacaacaacaacaaaagcaaTGTTTGCTTTATCTTAACCTGCTGGAACTACTTTTCATGGAGGAAGAAtttagtaaaattgaaaaacacacatttaaactagcatTTGCATCGTCTATTGCAAAACTTAGCTGTGAACTCCTTACAAATGACCAAATCACAGCTATGATGCTGCCACAATCTGCTATTACACGTgccctctccctttctctctcttgtattCTTCTGGTGGGCTTTTCTTCATATAAATCTCCGATTCTATCTTTGCGTCCCTTTCTTTCCATACTGTCGCAAAGCTGTTTTGCACATGGACCTCCTATAATAATACTGACTCTGGTTCCTGCCCTTAAGGGCCCGCTGCTCTCCATCTGCTGTCTAACAAAGTTAGCAGCTCAGTCAGGCTCTTCCTCACACTAACCTCTGCACATCTGGCCCTTTCGTAACGCACTACCGGAGCTTAAAGAGCTTCAAGTGGTCACATTTGGCTTTCTCACACTCCTGAATGCTTGGTCTACAGGTAACACTGTGATACTGAAGGTAGTTTCCTCAATtctcaaaccaaaacaaaacctaaaaaaaaaaaaaaaggaaaa
>TU45901
TGTTTATTTCCATTATATGCACATCCATTACATATACAATGGAAAATATGGAAAGATTTTATTCCCAAAATATTAACTCTCTTTCAGTCATTAAGGAGTTAaaagtttagtaaaaaaaaaaaaaaaaatctaaaacacacatcaaatccaaatacacacacaaaatatggtCCTTAAAGGCTTGCAAGGTATATGTTGAACAGTACATTCAGTGTATGTGGTTCTTTTCTGAAATAAGAGGCACAGAATTTAAACAATGGAAACAAAATCCATGttattttaatggatttaataCATAAATTGAATCATTGCAAGCTGAACAATAAAAGGCTGCTGAAAGCTTACGAAACCTTAAGGCCTTCTAACACCCATCCAAACGCTTGAGAAAAAGGCTAAAGATGGGCGTGCTGCATATTTACATTCTTGCTGAGCAAGAACATTATACAGAATATGGAAGAATAAACTCACAAGCAAGAAACAGCGGTTTTGAAAAAGATCAAACTGTAAATGCCTGAAGTGTTTTCAGTCATGAAAGTAATGAGGTTACGGATAATGAATTACCACATTCAAATCCCCTTCAACAGAGCAATACGCCAGGGATGGCCTGGCTGACTTGGCAACAACGTGTAGTGGAACACCACTCCTGATTTTTACACTGAGGGTTGTTCCAGACACAATATCATTTTCACTCAATACTTCTTACTTATCTGATTTTTCAGTATGAGAACACTGTCAACGCCAATGCCCTTGTATAGGACAACATAACACCATCACCTCACATGAACCCAAGGAGGGTGCTCTGATCTGGCCTCTGAATATGGTCCTCTTTTCTTCTAAGCACTGGTTATAGATAGCTGATCTATTTGTGACTCCGACAGAGTGTGGAGAGGATGAAACGGATACAGTTCCCTTGAACATGACTAGAACGTGACCTAAAACCAAGGTTAATAGCGTCTTAACACACATGGACCAACATCGATTTTGCTTCATATAGTCGTACACATACACAGTCTTTCACAGCTTCTACTGTGAATGATGAAACCTCCTTGTTCCATGTAGGAGTAACTTTAACTGGAACTCTCCTACAAGACAGAAATGCTACTCTGGAAGGTCGGGAGATCCTCACCAACCCAGGAGcttagaatccaagatggctgtaCAGCACGTCaactaatatatgtaaatgtagtAGTATTGTACAGAATATTAGCACTTCTATCTAGTATTGCATTAATAAATCAGTGGTACACACAGCACTCCCCAACTGTCCACTGTCTACATAATAATGTGTCCAATGCTAACAATGATAATTTGCTAGCTAATTTTTTTCATGCTTAACGCCCCTGTTTAACTCTGACATTCGACATCCAAGGTAAATCAAATTCTGGATTATTAAAGAATAGCTTAATCTGACCACCCAATTTCAATCACTAAAAAAAGTGATCTAGCTATGTTGCTTCATCCAAAAACAGCACGTTTTGAGCTTTTTCCCAACCGAAGGTGAATCATTTGACACTAATTGCTTAGTCAACATTATTAATtactaacaacaacaacaaaagcaaTGTTTGCTTTATCTTAACCTGCTGGAACTACTTTTCATGGAGGAAGAAtttagtaaaattgaaaaacacacatttaaactagcatTTGCATCGTCTATTGCAAAACTTAGCTGTGAACTCCTTACAAATGACCAAATCACAGCTATGATGCTGCCACAATCTGCTATTACACGTgccctctccctttctctctcttgtattCTTCTGGTGGGCTTTTCTTCATATAAATCTCCGATTCTATCTTTGCGTCCCTTTCTTTCCATACTGTCGCAAAGCTGTTTTGCACATGGACCTCCTATAATAATACTGACTCTGGTTCCTGCCCTTAAGGGCCCGCTGCTCTCCATCTGCTGTCTAACAAAGTTAGCAGCTCAGTCAGGCTCTTCCTCACACTAACCTCTGCACATCTGGCCCTTTCGTAACGCACTACCGGAGCTTAAAGAGCTTCAAGTGGTCACATTTGGCTTTCTCACACTCCTGAATGCTTGGTCTACAGGTAACACTGTGATACTGAAGGTAGTTTCCTCAATtctcaaaccaaaacaaaacctaaaaaaaaaaagtaaaggaaaAACTTCATGAGTTGATTATGGTGTGGAGGAAAAAAAGCCATTGCATGCGATAACTAGAGCTACAAGGCTTCACAGTGAGCGTCCGGCTTCACAAGAGCACTGCGTAACTCTCACTGGTCCCAGTGCCAGAGTGCCAGCTCCAGGACTTCTATTCTTCTTAGTTCATCCAGAAGGCTCCAGGCTGCTGATGGCTCTTCACTTGGCCAGTCGGAACACAGCCAGGTCCAGCGGCTCTTTGCTGGGCACGCACCAGTCGTCAGCCCCCTGGCTCACGGTGTAGTTCCGCAGGGCAGTCTTGTTGTACACTGGGAGTCTCTCTACTGAGTCGGTGGATAACgcctTTTAAATGAATGACAGCATCTGTACCATAGCCTTCCATAGAGTAGAGCTGGAGGTCTCCCTGGAAATACTTTGCATAGAGGCGAGAGATAGGCAGCCCGTAACCAAAGCCAGCCTGTTGACAAAACAGGAGAGGCTTTCAATTTTCAAATGACACATGAAAAGCACTGAGAGGTCATAAACAGAATCATTTATCACTGCGATTTTCCTCCTTGCTGCTTAGACAGCTGCAGCCTGAGCGCTGGGTTTATATGACAGGGTGGAGCTTATGTGTGTCAAGTGGAAAGAAAAACGCAAGAAAAATGTTCACGTCAAGCATCTGAACTGAAACACGTCTCAATGTCTCACCAGAGGTGCTCCGTGATTGTCGCCAAGCTGAGGAGTCGGGGCTGTGGAGTACATGTAGCTGAAAAGATTCTCCATCTTTCTGAAAGGCACGCCACCGCCTCTGTCACTCAtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45899 False 2137 lncRNA 0.38 2 3545453 3557491
TU45901 True 2936 lncRNA 0.43 2 3545453 3549644

Neighbor

gene id symbol gene type direction distance location
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding upstream 146311 3392308 ~ 3399142 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding upstream 202763 3322964 ~ 3342690 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding upstream 363274 3126382 ~ 3182179 (+)
cacna1g cacna1g coding upstream 475622 2730484 ~ 3069831 (+)
spata20 spata20 coding upstream 847417 2639255 ~ 2698036 (+)
tbx21 tbx21 coding downstream 170925 3728416 ~ 3746114 (+)
pnpo pnpo coding downstream 220251 3777742 ~ 3781778 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 236384 3793875 ~ 3801538 (+)
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding downstream 255605 3813096 ~ 3820968 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 273893 3831384 ~ 3836581 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 154876 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 225531 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 327111 3217004 ~ 3218342 (+)
G33959 NA non-coding upstream 783938 2760908 ~ 2761515 (+)
G33950 dhx8,LOC107706906 non-coding upstream 910431 2628670 ~ 2635022 (+)
G34177 NA non-coding downstream 245488 3802979 ~ 3804577 (+)
LOC103040174 NA non-coding downstream 295954 3853445 ~ 3861449 (+)
G34188 LOC108426464 non-coding downstream 306877 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 445992 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 580264 4137755 ~ 4138153 (+)
amz2 amz2 other upstream 1488490 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2157434 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2552935 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2560072 983167 ~ 985381 (+)
LOC111192417 NA other upstream 3120982 419010 ~ 424471 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other downstream 6539 3564030 ~ 3659132 (+)
G34309 NA other downstream 613560 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1325065 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2135031 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2689155 6246646 ~ 6258050 (+)

Expression


Co-expression Network