tbkbp1 (tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771)


Basic Information

Item Value
gene id tbkbp1
gene name tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3564030 ~ 3659132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45914
atatatatatatatatacaatagatgatgTGATACTAATGTGCAGACCAGTGCAAACACAGTGATTCTACTGCATAATCaaatcacacacagcacatgTACATTCAGTCAGACCGGCATCCTTCTCCACTGAGCTACAGCGTagagacaaaacaacacttACGCCACTATTCACAAAGAGTTCACTCAGGAGTTATTTAAAGAGCTATTGCTGATGTTTCTCTTCCTCAGCCCGCacttctcagaaaaaaaaagcagatcaCCTGTCTCTGAATCTTCTTCTAGTGGTTTCTCTTTCAGCCTGTAGTTTGGTGTGTGACTACCTTGTGATATTCTTAAATAACTCAGGGGACAAAGCTTTGTGAATATGGCTCCTGTACCGCACTTCTTTAAACCTCCACAGAGACAGTGTGATAACTCGCCAAATCTGTGACACTGCAGAGAGAACATTAATGAggtgtaattatagaaatattttgtgatagtaatgagggacttgtaaaaaaaaaaaagaaaaaaaatacaaatattataaaaagatagattaaataaatgcataatgtgtcattttttttctttctgtaaatACTATGGTAAATAAACGGGAACTTGCACTGATTTTGGTgtgattgtttttgtttataaagtatattgatgtagattattttagatttcttgacAGTTTCTTGACAACTACAACTTTACAGAACAGAGAAGAAGAATTTTCGCCCCAGTTTGCACGGCC
>XM_007259170.3
CAGGgaaagcagaagcagcagcggcggcggcggcagcaTCATCCGGCGCACAGCCTCTCTCAGCTCGCACTGCTGGGGTTTCTGGACCCCCGGACCCCCGTTAAGCCATGGCAGCCGAGGTCCGGTCAATGGGGCGTCGCTGAGGAAGGGGAGTGAGTGATGGAGTCTCTGTTTGGGGGGGAGCTGGGCCTGCTGGGGGGCAGTGAGGGACTGAAAGAGGATGGCTGTGGAGTGGGCTGGTCCGGATCGCCCTCTCCGGAGGACATGTACTCAGCCTCCCACTTCGCCCTCATCAGCGCTTACCAGGACATCAAGACCAGGCTGGTGGGGCTGGAAAGAGAGAACACCGACATCAAGAGGAAACTGAAGATCTACGAGATAAAGtttccTATGATCGGTGACTTCGGCGATGACAGAAATTCCTACTGCTCCTTTGAGCCCAAAGACACAGCTCTGCTCCAATCAGAGAACGGCAATCTACAGCAACGAATCAACATCCTTACTCATGAGCTTCAGAAGAGTAAGGAGCGTGAGGAACAGCTGGAAGATGTGATTCAGGCCTATGAGAAGATCCACATGGAGAAGAGCAATCTCCAAAGAGACTTGGACAAGATGACGTCTCTGGTGGAGAAGCACGTGGAGCGGATCCACAGTCTGGAGTCTGCGCTGAGGCAACGAGAGAGCTCACTCCACAAACTGAACACACAACTGCACAGCAAAGACATGCAGTACCTGCAGCTGCATGCCAGCCCAGATACACACAGACTGGACTGTCCAGCTTTGACCCTTCAGAGCTCCCGCAGTCTGGACACTCTGTCCGATCTCAAACTGCAACAGCTGGAGGCGGAGCTAGAAGGGGCGCGGCACGAGGCTCAGGGGGCGTGCCAAAGGGAGGAGGAGCTAAAGGCTGAGTGTGAGAGACTGCAGGAAGAGTTAAGAGAGCTTCAGAATAACCAGAGGCAACGGGAGGTGAACTCCACCTGTGCCCAGTGTGACGTGGAGTGGATAAAGAAGGTGGGAGACGAACAGGTGAACCTGGCCCTGGCCTACACTGAGCTAACCGAGGAACTTGGCAAGCTGCAGGCACTCAGCGCCAAACAGACAGAGATCCTGAGGAAAGCCTCGCAGGAGCAGGCCAGTCCAGTTCAGCGTCATTCTCCTGTGCCTCTCCAGAGGCATTCACCTGTTCCTCAGCGCCACTCCCCCATCCAGCAACGCCACTCCCCCATCCAGCAGAGGCACTCCCCTGTGCCCCAGAGACGCAGCCCAGTGCTGCAGCGCCTTTCCCCAGACATGCACCGCCGCTCACCCCTGCCTGAAATCAGCGATGGCCCCGCCTCCTACTCCTGCAGGCCAACCATCCACCACCTGAGAGCCAGCTTTCAAGGGCGCCGGAGCTACTCGGAAGTAGCAGACCCATCGGCCTACCAGCGGCCCCCTCGCTTCACCCTGGACCCCGTCTCCACCCTCCCCAAACCCCGGCCCTATGTGGAAAGCTACCACAAGCAGCAGTCCCCACAACaatcacagcagcagcagcagcagcaacacggAGGCAGCCCTCACATTCTATCTCAGAGACGAGGCTCGCAGCCCGGGCTTCAGGTCGTGGGAGGTGAAGGGAGTCTAGCTGAATCCCCGAGACACTCCAGAGAGCTCTCTTTCCAGCACCAGGAGTTGTCCCATCTGCATTACGAGCCCCAGCCAGGCCCGGCGCCACTCCATTCCTCCCCCCAGCCACCCCATTCCTCAGAGGACGAGGAGGAGTGGACCTGCCCCCATCCTATCAGTCCCCCGCGGACACTGGGCGCTTCTGGCCCTGCCTCCAGCATGAGAGGCCCCGCCTCCTGCTCCGCCTTCCCAATACCAGCACGCCCCAACACACTAAGCTGCCATCCACCTGGGTACCTGCATGCAGAACATGCCCAGTCCTGGCCTTCCATTAATCTGTGGATGGAGACAGAGGAGGAGAGTGATGTCAGGAGCTGCCCGCTGTGCCAAGTGATCTTCCCCATTGGTTACCCTGATGACGCCCTGATCAAGCACATCGACTCGCACCTGGAGAACAGCAAGATCTAAcaccccccgccccccctcacACCCCTCACACCCCCACCTCTCTTTTAGACTTTCACTAAAGTCTCATTAGCAGCTCTTATGCGCTTAGCTGGATGCCTTGAAAGTGAGAGGAGAGCCAGCATGCTGAGGTAAGATAAAGCGAGGCCTTATAAAGTGGGGCTGATTGTGATTCTGTAATATCATAGCAGATGTATATGCAGTGTTTATATGGTGTTACGTTATGAATGCCACCGAGAGATGAAAAAGGCTTTTAAGGCTCCTTCCGAGCGCAATGTAATCACgaccctatttatttatttatttatttatctatttattcatttgtttatgtATTCGAGATGTTGGACTCTTTTTCACTGTCATATCTCCCTGCACACAGACTGACTGTCCTTGGAGTTAAAAGAGCAGTCATAATCCAAATAAACCACTCCCATAAACACGCATTACTTCTCCTGACAGAGTAAATTCAAATGTTTGGGATGTAACTATTGTTTCTGTACCACTGCAAACCTCTCAGAGTTTAAATGAGCTGTTAGCAATCCTTTTGTTGACTGTTATGAATTGGGGTACAGCAAGAGGTGGGTAGCGACTAGTTACAGTTATGCAGTTACATATATTTACAGGTGCCAAAGAGTCCGTTTATTGAGCATTTCAAACAGTTCttccatttacctcagaagtcgGATGTCAGAGCTAATAATGACGTCACAGCGGAGTTGACAGTTTTCACAAACAATACTTATCAAGGTTTGTCATTAATTTACCAGTGTTTTTTGGTGAATCCAACTAAAAAAATCacccagtttttattttatgtgcaaTGATTGTTAGCATAGTCCCAGATTAGCTTTGTTGTTGCAGTATTTTGCACAACAGAATACTATAAAAACATGTCCACAGATAGAGGTTGGAAAGTATTGTGGATGACCGAACTCAAGAGACTCAAATACATAGATAGAAGTACTAATAAACTGTGTAATAccactgcttttactactgttgatgtgcAGTCTTCTTGGATTCTAATTTAGACGTTGAGGAAGCTGTTCTTTCCAAATTGGAAATCTGAAAGTGGGAGCGTTCAAGTTGAAATTTCCAACTGGGAAATAATGAAATTCAaatattacatacatttatttaagacGGAGATTCTCAGATGCTGCTGAACAAGACTATTTACAACCCTTCCATTTCCTTTTACTGAGAAATTGCAGGAAAATAATGATAAGTTCGGCTTTCATCAAACCAGCCAGTTTATAAAACTAGAGCaatattttaacattgtaaCAGAAAGgctataaatattcatgagtcTTACCGGATGGTGTTACTTTAGCTCAGTATGATGTGCTGTTAGCAAGCTAAACAGAGTTGAATCAGGTCAGCTTTTAGCCTTTCCCCTGCTACCTTCCCCTGGTTTGCCTTTCTATAGTCTTACAGCTAAATAACATAAGCCAGCACTTTCCTGATTCTTACTGATGTGTGTTTAACTCCAGTTTTGTAATCATGTGAGAtagaccagttttttttttttttttttttttaacgctaCTGTTAGCGCTTTTAGCACAGTGCGATTCCCTACTTCCTCATGTGCAAACTTTGAGCTTCTCACCTGGAGACACTGGCGACGAGAAAGGCCAGTAATATGCCAAggaaaatacattttgtcattCAAAAATCCAAAGTCTAATTTTGAATGATTGCCTGCAATTGTTTCCTGAATTTAATTTCATTAGGTTGTGTGAGATGACAGCAGCTTTGTAATCAGTTATGCACCTGCTGTTTGAGCTTAATCCTCTTATTTAAATCCAAAATGTTCACTAAAAGAGAAGAATATAGTCTAATTGTTTTAGTGATAAATGCATTAAGAGTTTCCACTGCAGGTACTtcagttgttttgttgtttttttttttttatttcagtgaagTAAATGTTTACCTGAATATGGATTTATGCTACTCTGCCCACCTCTGGAAACAATTCAGCTCAACACTGAGACATTTCTAAAGTGCTACAGAAAAGGGTTAAGAACCTAAACATTTGAATTTACAGTGCAAACATGGCCGTACAGACGAATGCCGTGTACATTTTCATTGTCTGAAGAGTGATTGTTTGATTGTTGTAAAGAGGGTGTCCTGCAGGGCGGGGCATCGCGGCCTTGGTAAAAGAGGGGATATGAGGTACCTGGCCAATGGCTGCATTTGTAAtggatataatataaatatcattTGAATTTCAGCACTTTATACAGACCCTTAATATCCAGTTTACCTTTACAAGTATGACTAACACTGAGGCAAAAAATAACCGAAGagatatcatttatttttaatattcccAACCGTCTATCTTAATTACTCCTTAGCTTGGTAGAACTTCcctttaacactttaactttaactataCACACACGTGTACCTATATGTAAACTCACTATTACATCTCCACTGTTCGTCTTCCTCTGTGAGAAAGGAAAGTCCTTGGATGAAGAAGTATCTTAACAGGGTATCAACCACATGGTTCCAATCATCCAAACTCACAGATGCTTAAGCAAAACACAGATGCTAATGTCTTAAATGGATCAAATGTATTATACAAATGTATCTTCAAATGAGATTGGGTTGGAGGACAATGTGGGTATTTATCTTAAATTTGATAAAGCTCTTTATTACTATAAAATCTTCAGATTATCCAACTTCTCCACAAACTTGGATGGATTTTCTTTCTCCCAGGTTGATACCGTGGATTTGTCTGAGATGCACATCATGAAATGATAagagattcattcttctgaCCAAATCACTAAACACTTTAAGCAAAAATGCTtcactgtatgtactgtaaatgtACCTGACCTGTATTTAAAGCCAGTTACGTGTATTAACCTGTAAAATCTACTGTGTACATAAATAGACATTTTGTGAGCTCAAAAGAGAGTGAAGAAcgaaagaaaggaaaatattGGAGATCGCAAATTAATATCCCATACACTTACTACAGTAATAAGACACTGGAGGCCAGTATGGCAAGAACGAagtgaaacattttaattagCTACCTTCCCAGCTACTCTTTCCTGTGTTTGCCCTGTACTGCATTGTGAACTCTCCCTGCTAGCGACTCGCTGTCCGATATTCATGGCCCTTGTAAAAGTCAGGCCGCTTAACATCCCAGTGACCCAATTAACGAGCTACCAAAGAGGGAAAGTAGCACAAAATGATCACATCATTACTGCCCCAAGTGCTAAATTACATGGCCAAATATAGCTGGGAGCAGACAAACCCTTTACACTGGCTGTCAAATAAGTGAAGAGGATTTTCAAAACtggataaagagaaaaaaatcaaatactAAAAATGGTAAGAGGGGAATGCTAGCCTTCAGAGTAATTAGTATTAAGATTAAGACtcaatattaacaaaaatattttaatccagtattatataaatattataatccAGTACTTAATAAAAGCAGTACAGTATGATCAACCTTAAgacttaaaagttaaaaaagttttggaaaTATGGTCTAAAATTAGTTaaataaaagtaccaattaagCATATCAATCTcacattttgaaacattttgagTGCAACCTTTTAAAGGCCTGAGCTacatttagtatatatatatatatataatatatatatatatatatattatatatatatatatatatatatatatatatatatatatagatgatgTGATACTAATGTGCAGACCAGTGCAAACACAGTGATTCTACTGCATAATCaaatcacacacagcacatgTACATTCAGTCAGACCGGCATCCTTCTCCACTGAGCTACAGCGTagagacaaaacaacacttACGCCACTATTCACAAAGAGTTCACTCAGGAGTTATTTAAAGAGCTATTGCTGATGTTTCTCTTCCTCAGCCCGCacttctcagaaaaaaaaagcagatcaCCTGTCTCTGAATCTTCTTCTAGTGGTTTCTCTTTCAGCCTGTAGTTTGGTGTGTGACTACCTTGTGATATTCTTAAATAACTCAGGGGACAAAGCTTTGTGAATATGGCTCCTGTACCGCACTTCTTTAAACCTCCACAGAGACAGTGTGATAACTCGCCAAATCTGTGACACTGCAGAGAGAACATTAATGAggtgtaattatagaaatattttgtgatagtaatgagggacttgtaaaaaaaaaaaagaaaaaaaatacaaatattataaaaagatagattaaataaatgcataatgtgtcattttttttctttctgtaaatACTATGGTAAATAAACGGGAACTTGCACTGA

Function

symbol description
tbkbp1 Predicted to enable metal ion binding activity. Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to be active in cytoplasm. Orthologous to human TBKBP1 (TBK1 binding protein 1).

NR:

description
PREDICTED: TANK-binding kinase 1-binding protein 1

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU45914 False 744 lncRNA 0.35 2 3593249 3659132
XM_007259170.3 True 6383 mRNA 0.44 10 3564030 3659005

Neighbor

gene id symbol gene type direction distance location
cdk5r1 cdk5r1,LOC108426451,LOC103047129 coding upstream 164888 3392308 ~ 3399142 (+)
LOC103043460 LOC108426414,LOC108274136,LOC107754112,LOC107743783,LOC107566616,LOC107691214 coding upstream 221340 3322964 ~ 3342690 (+)
uts2r uts2r,LOC108426413,LOC108273405,LOC107754100,LOC107689263,LOC107552777 coding upstream 381851 3126382 ~ 3182179 (+)
cacna1g cacna1g coding upstream 494199 2730484 ~ 3069831 (+)
spata20 spata20 coding upstream 865994 2639255 ~ 2698036 (+)
tbx21 tbx21 coding downstream 69284 3728416 ~ 3746114 (+)
pnpo pnpo coding downstream 118610 3777742 ~ 3781778 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 134743 3793875 ~ 3801538 (+)
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding downstream 153964 3813096 ~ 3820968 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 172252 3831384 ~ 3836581 (+)
G34105 NA non-coding upstream 6539 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 173453 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 244108 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 345688 3217004 ~ 3218342 (+)
G33959 NA non-coding upstream 802515 2760908 ~ 2761515 (+)
G34177 NA non-coding downstream 143847 3802979 ~ 3804577 (+)
LOC103040174 NA non-coding downstream 194313 3853445 ~ 3861449 (+)
G34188 LOC108426464 non-coding downstream 205236 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 344351 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 478623 4137755 ~ 4138153 (+)
amz2 amz2 other upstream 1507067 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2176011 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2571512 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2578649 983167 ~ 985381 (+)
LOC111192417 NA other upstream 3139559 419010 ~ 424471 (+)
G34309 NA other downstream 511919 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1223424 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 2033390 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2587514 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2843013 6502145 ~ 6541460 (+)

Expression


Co-expression Network