G34166 (pnpo)


Basic Information

Item Value
gene id G34166
gene name pnpo
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3777900 ~ 3781741 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU45973
CTGCATCACAGACTCTGAAATTTACATATACCACAGCTGTCATTTTACTGCAGTAATGTTTTACAGCTGCAACAGGTGAAACAGTAATGATGGTTTGGCACAGTTTTAAAAGTGCACTTATAATTAAGACACAAATAGTAGCTACACTAAAGACAATTAAAGGCATGTAatgaaaaacagacaaaacaaaaacgACAACAAAAATtccataaaatacattataacaGAAATTCCTAGTACAGATTTCAAATGACAGAAATGAATCTTGTGCTTTCCCTTTTTTTGATGGAGGGTATGATGTTCATATTTTCAATTATTAATCTATGTTAAAAGACtttaatatactaatatttttgttaaacggttaaaatgacctgaagtaCATCCTTAACTCGGTTAAAACTAGAAAATCTACCACTTTCTTAAGAATTTTCTTAACAGGTAAAAATTAAATGGCTTCTCATCAGTCTTTTTAAAGTAACATCCTTATCTATTACATTTAATATCCATATGACTGACAATTACTGTAAAATGATGCCTATTAATGTCCATGTCACCAATAGTGATACTTTTTAGGTTTGACAAAGAACACAGCTCCACCATATTCATATACACACTCTGTTAAGGTGCTAAGCGGTGGTACACCCAACCACCCTCAGCCAAATGTTGCATTTCTCCAAGTTCAGACACTCCGTCTTTGAGCTTTGTGAAGACGATGCGATCGTGTAACCGATTGGTCTGACCCTGCCAGAACTCAATCAGAGAAGGTTTGACCATGTAGCCTCCCCAGTAGTCTGGCATGGGAACCTCAGAGTCTTTATACTTCTCCTCCAACTCTGCATTCTTCTGTCTTATGTACTCTCTGTTGGGTATCACAGTGCTCTGCCTGCTCACTACTGCACCAATCTGACTACTCTTGGGTCTTGAGTGAAAGTATTCGCAGGAACTCTGATATGGAATTCTCTCTACAGTTCCTTCAATTCGAATCTGCCTATTGAGTGGTTCCCAGTAAAACACAAGGCATGCATGTGGGTTGCTCTCCAGTTCGTTACCTTTACGACTTTCATAGTTTGTGAAGAAGCGAAATCCCTCATTGCTATAACCTTTCAGCAGCACCATACGAGCAGACGGCCTCCCGTCCTTGGTTGCTGTTGCAATGCACATGGCATTGGCCTCCCCAATTTCAGGACATTTTGTAGCTTGATCAAACCACTCGCCAAACTGCTTTATAGGGTCAAGGGACACAAGCTGATCCTCTTCAAAGCactataacatcTCCGCGTCGCCTTTGTACTTCTTTCTCATGTTACTCAGATCCATTGCTGTGCTGTCAGTGCTCCACTTGGTGCAGTAAGGAGAGGATAATAATCCTGCGCGGTAATAAAGTGATAGAGCAGGTCTGCAGGGGGAGACCCgggctgtgctgctgctgctgatgcacctGAACGTGCTGCTGAACCTCAGCACACGTTTCATGCTTGTAAACAGCGCACAGTCCCCTTCGTGACGTAATCACGTCGCCACAACGTTACATAAAACATCGGTAACTGTATCGCTGAGTTTAGCGCGTGTCGTTTAGAAGAGT

Function

symbol description
pnpo Predicted to enable pyridoxamine-phosphate oxidase activity. Predicted to be involved in pyridoxal phosphate biosynthetic process. Predicted to act upstream of or within pyridoxine biosynthetic process. Is expressed in several structures, including digestive system; female organism; male organism; nervous system; and spleen. Used to study pyridoxamine 5'-phosphate oxidase deficiency. Human ortholog(s) of this gene implicated in pyridoxamine 5'-phosphate oxidase deficiency. Orthologous to human PNPO (pyridoxamine 5'-phosphate oxidase).

NR:

description
PREDICTED: pyridoxine-5'-phosphate oxidase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45973 True 1585 lncRNA 0.42 7 3777900 3781741

Neighbor

gene id symbol gene type direction distance location
mrpl10 NA coding downstream 1715 3770639 ~ 3776185 (-)
LOC103044690 osbpl7 coding downstream 7408 3749171 ~ 3770492 (-)
LOC103046317 LOC103046317,LOC108426453,LOC107565668,LOC107754097,LOC107677886,LOC108274275,LOC107743772 coding downstream 222681 3545433 ~ 3555219 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773 coding downstream 245511 3403947 ~ 3532389 (-)
LOC103047433 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC107691212,LOC103367354 coding downstream 387322 3382775 ~ 3390578 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding upstream 21171 3802912 ~ 3807018 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding upstream 42177 3823918 ~ 3829363 (-)
ccdc189 NA coding upstream 54882 3836623 ~ 3839557 (-)
LOC103039858 LOC108426464 coding upstream 79833 3861574 ~ 3870176 (-)
LOC103038619 NA coding upstream 102273 3884014 ~ 3893365 (-)
G34159 NA non-coding downstream 48940 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 378787 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 588464 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 692494 3060369 ~ 3085406 (-)
G33944 etv4,LOC107743788 non-coding downstream 1174711 2574387 ~ 2603189 (-)
G34218 rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773 non-coding upstream 58262 3840003 ~ 3842727 (-)
LOC103038927 NA non-coding upstream 98841 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 121593 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 128548 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 142701 3924442 ~ 3924669 (-)
G34046 NA other downstream 583523 3181168 ~ 3194377 (-)
G33904 NA other downstream 1468571 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1581805 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1600841 2169023 ~ 2177059 (-)
LOC103022010 rgs9b,LOC108444257,LOC107660859,LOC107734240,LOC107584086,LOC107709642,LOC107692097,LOC108273767,LOC105888735 other downstream 1735597 2022071 ~ 2042303 (-)
prr15l prr15l other upstream 1384 3783125 ~ 3789192 (-)
G34214 NA other upstream 54880 3836621 ~ 3883469 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1189957 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1473878 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2121847 5903588 ~ 5928154 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G266661 NA non-coding CI01000063 null 7381082 ~ 7381335 (-)