G51958


Basic Information

Item Value
gene id G51958
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1105830 ~ 1110232 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59211
TGGAACAGCGTACGGAACATTTCCAGCGTTTACTTACAACCTTTGTGAGCTTCTCGGATGAAACCTGCGCCTCTTCTAGGAATTAATTCTCTCTGAAACTCAACTTTTTACGCCGAGCTCCTCTGCTTCTTATTGTTCGTTGTTTTAAAGTAGCCTATTGAAGTTGGCATTTGTTTGAGTGAGACTATAAGCAAATAAAAAGAGGCCCATGATGACTGCTGGGAGATGACATGACATCGCTAATGAGGAAAGGCCCATCACAAGACCACACGCACAAATGTTTGATGGCGTTGCTGTGCTGATGACTTACTTTGTTTATGGCATTTGTTACAGGGAACACACACAGCAAACATCAGACATACATGAACCATCAAACAAGTGGACAACAGTACCTACATCTACTTTCTTTCCTAATCCTCAGCACACCGGCTAGAAGACTAACGAATGGAGAGGCAGCTGGGAATAAAGTCGTATGCCATTGACCCCATCCATCCAGAGACGCCCCCCGCCACACACACACACCCACCATGGCAGAGGGCAGATGACAGACTAGCCA
>TU59212
TGGAACAGCGTACGGAACATTTCCAGCGTTTACTTACAACCTTTGTGAGCTTCTCGGATGAAACCTGCGCCTCTTCTAGGAATTAATTCTCTCTGAAACTCAACTTTTTACGCCGAGCTCCTCTGCTTCTTATTGTTCGTTGTTTTAAAGTAGCCTATTGAAGTTGGCATTTGTTTGAGTGAGACTATAAGCAAATAAAAAGAGGCCCATGATGACTGCTGGGAGATGACATGACATCGCTAATGAGGGAACACACACAGCAAACATCAGACATACATGAACCATCAAACAAGTGGACAACAGTACCTACATCTACTTTCTTTCCTAATCCTCAGCACACCGGCTAGAAGACTAACGAATGGAGAGGCAGCTGGGAATAAAGTCGTATGCCATTGACCCCATCCATCCAGAGACGCCCCCCGCCACACACACACACCCACCATGGCAGAGGGCAGATGACAGACTAGCCA
>TU59213
TGGAACAGCGTACGGAACATTTCCAGCGTTTACTTACAACCTTTGTGAGCTTCTCGGATGAAACCTGCGCCTCTTCTAGGAATTAATTCTCTCTGAAACTCAACTTTTTACGCCGAGCTCCTCTGCTTCTTATTGTTCGTTGTTTTAAAGTAGCCTATTGAAGTTGGCATTTGTTTGAGTGAGACTATAAGCAAATAAAAAGAGGCCCATGATGACTGCTGGGAGATGACATGACATCGCTAATGAGGAAACACACAGCAAACATCAGACATACATGAACCATCAAACAAGTGGACAACAGTACCTACATCTACTTTCTTTCCTAATCCTCAGCACACCGGCTAGAAGACTAACGAATGGAGAGGCAGCTGGGAATAAAGTGGGTGCTGCACAGAGTTTCCCTCCATCTGTAATATGAATCACCATAAAGTTAATGTATCAGTGTTTAAAAGTAGAACTACGATATGACTCGCGTATGATCAATGGCTCTGTATATTGTTTGATATAATAATTTATTCAACCTATAAGGCTTTGATAAAACAATGTTGAAAAGCAATTTAAATTAAATTCATTTAAATGTCAATTCTCATGGTTAGGATTTTTCTATAATTGGCTATTTAATTAAAATAATTTTCACAGTCATTAATACAGCTCGCAACTTGTAGTGCACTGACATGTTTTAATTACATGGTATTAACAAAATTGATATGCTTTAGAAAGCATGGTGAATAAGAAATAATT

Function

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 4B isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59211 False 556 lncRNA 0.39 3 1105830 1110232
TU59212 False 470 lncRNA 0.33 4 1105830 1110232
TU59213 True 741 lncRNA 0.55 3 1106302 1110232

Neighbor

gene id symbol gene type direction distance location
CI01000009_01061214_01063408 KLF5, KLF5B coding downstream 42422 1060175 ~ 1063408 (-)
CI01000009_01039363_01051161 NA coding downstream 54275 1037813 ~ 1051555 (-)
CI01000009_01018746_01020434 NA coding downstream 85345 1018157 ~ 1020485 (-)
CI01000009_00995615_01005713 NA coding downstream 99387 995224 ~ 1006443 (-)
CI01000009_00981620_00988912 NA coding downstream 116778 981355 ~ 989052 (-)
CI01000009_01112860_01113252 NA coding upstream 2380 1112612 ~ 1113252 (-)
CI01000009_01121956_01122628 NA coding upstream 10955 1121187 ~ 1125787 (-)
CI01000009_01128947_01131135 NA coding upstream 18652 1128884 ~ 1131161 (-)
CI01000009_01138569_01164523 NA coding upstream 28017 1138249 ~ 1164537 (-)
CI01000009_01208525_01212914 NA coding upstream 98142 1208374 ~ 1214517 (-)
G51970 NA non-coding downstream 1340 1103588 ~ 1104490 (-)
G51959 NA non-coding downstream 3445 1098226 ~ 1102385 (-)
G51960 NA non-coding downstream 10563 1094548 ~ 1095267 (-)
G52009 NA non-coding downstream 22248 1083319 ~ 1083582 (-)
G51949 NA non-coding downstream 50405 1012830 ~ 1055425 (-)
G51957 NA non-coding upstream 120896 1231128 ~ 1233278 (-)
G52082 NA non-coding upstream 123820 1234052 ~ 1234740 (-)
G52083 NA non-coding upstream 124724 1234956 ~ 1235612 (-)
G52084 NA non-coding upstream 126330 1236562 ~ 1236785 (-)
G52085 NA non-coding upstream 126774 1237006 ~ 1237261 (-)
G52098 NA other upstream 291700 1401932 ~ 1407627 (-)
G52410 NA other upstream 1441492 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1773456 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 2150971 3261038 ~ 3262843 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location