LOC103040174


Basic Information

Item Value
gene id LOC103040174
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3853445 ~ 3861449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46010
CCCTCTCCGCAGCTCAAAAACAGCGAGCCAGCTGCGGTTCTTTATCTCCTCCACACTGTTTTACACGCAGGATCTCAGCGCCATGGACCTCCACTCCGCGTGTCGGCTCCTGTGTTTAGTCCTCGTGGCCGGGACTCATTTAAGCGGAGGAATACACGCGGAGAAAAACCCATCCTGTCAATACCAAGAGTTTTACAACAATGATCTTGGAGAATGTATACCCTGCTCTATATGCATAAAATATCCCAAAACCCCATCATGTGACACATGCCCAGCCGTAGTGCCTTCAGACCCTTGGAGGTTGGCAGCCATCACCAGTTTTTCAGTGCTTGCAGCTTTGGTTGTTTTTGGATCATTGCTAATAGGAGTTCTAGTTCATCAATGCAGGTCCAGAAGGACTTTACGTGAGCCAATTGAGGAAACTACAGGACCACTTTATCCAGTGTAGGAGCAGCACTAAcaaaatctGATGGAACAGAAGAAGACCAGACAACCAAGTTAGTTCAGTCAGTGAAGAGCTGGCTGATACATTGAGTGTTCTTTGAGCATGTAACTcttctaatttattttgttgGTAGATCAAGCTAGAGGTGTTTAATGCACTCCGGAGTAAGCCTGTCGCACTGTCCCCATGCTCTCAAAAGCTGCACTGAGACCTCCTCATTCACTGTGCAGAAGGTGTGAGCAGAGTAGAGGTGCTATATGAGTATTATCCTCTTCATGACAGCGATTGGGTTCCCGAAAATAGGTCAATGGATTGCTTCTGAGCTTCGAGTCGACTTTCTACGGTCACTTTTCTGACAGGCATTACCCTTTTAGGTGTTACAATGAGGacctttgcttttgtttttgttttatatctttttaaaaCCCCTATGCACTTATTTTTATAGATGTCCTTTTGtagatttctttgttttttatttatagagaTTTACCAGTGAAAACTGCCTTAACGTGCCAGGAGAATAGTGTTTATGAACAAGGGCTGTACGTTACACAGCAATACATTTTGTACAATAACTATTTACCTCCATGTTAGATTTATTCTGCCTTATGGCATATTGAATGTATTGTGTAACCAATGTTTTCTAGATCTGTGATCTGTTTTATATTTGAGTACTATGCACTGTTACTTATTGTAGTATCAACAATGTTCTGAGACTGACTGGCGAGACCTATGCCCGTCTATGGTATTAAAGTTGTAGGACAGTTCACACTCTACAAGGATgccagtggaaaaaaaaaaacatgaatctgATTAAGACTGCCACAGGTGCAATTAGCCAGTTAAAGAGGTGGATGTGGCCACAGAAACGTCTAAAATCCACTGAATTCCTAATAAAGACATCCTACAGTTCATGTTTCAACATGCCATTACATTGTGTGTGATTGTCCAAGGTGTCCAATTGATGGGCTCTATGTTCTTGGGTCCAGTTTAATCATCAGTGAGTTCAACAAACTATTTTACCAAGCCCTGTGCACCTTTTTCTTATATACTGAGAAATTAGGAGTCAccataactgatcagttttagAACATATGTGCACTTGTGATAAAGTAAAGATGCATCCATGGTTCCATGAAGATGCATgttt
>XR_455621.3
TTACACTCCAGCAGAGACCAGACCCAGCAGAAGTCTGAGTTTAGAGAGTTTTTAGTGGGTAAAAGTAACGAGAGtttacacactgttttacaCACATTCTTTATTCAGGACAGGCGTGTTCCCTACCccgtgtaaatgtgtgtgtgtgagagagagagctctgagCTTCAGGGAtgcccttcctctctctctccgcttgtCGAGCCTCATTAATAGATTCTCAGTACAGTACATAGGAAATGAGTCAGAGGAGCTCAGAGCCCAGTGCGTGGGTGTGGGCGCTATTAAAACAAGGCCGAGACTCGCGGTGACTCATTCACATGCTCGGCCCTCTCCGCAGCTCAAAAACAGCGAGCCAGCTGCGGTTCTTTATCTCCTCCACACTGTTTTACACGCAGGATCTCAGCGCCATGGACCTCCACTCCGCGTGTCGGCTCCTGTGTTTAGTCCTCGTGGCCGGGACTCATTTAAGCGGAGGAATACACGCGGAGAAAAACCCATCCTGTCAATACCAAGAGTTTTACAACAATGATCTTGGAGAATGTATACCCTGCTCTATATGCATAAAATATCCCAAAACCCCATCATGTGACACATGCCCAGCCGTAGTGCCTTCAGACCCTTGGAGGTTGGCAGCCATCACCAGTTTTTCAGTGCTTGCAGCTTTGGTTGTTTTTGGATCATTGCTAATAGGAGTTCTAGTTCATCAATGCAGGTCCAGAAGGACTTTACGTGAGCCAATTGAGGAAACTACAGGACCACTTTATCCAGTGTAGGAGCAGCACTAAcaaaatctGATGGAACAGAAGAAGACCAGACAACCAAGTTAGTTCAGTCAGTGAAGAGCTGGCTGATACATTGAGTGTTCTTTGAGCATGTAACTcttctaatttattttgttgGTAGATCAAGCTAGAGGTGTTTAATGCACTCCGGAGTAAGCCTGTCGCACTGTCCCCATGCTCTCAAAAGCTGCACTGAGACCTCCTCATTCACTGTGCAGAAGGTGTGAGCAGAGTAGAGGTGCTATATGAGTATTATCCTCTTCATGACAGCGATTGGGTTCCCGAAAATAGGTCAATGGATTGCTTCTGAGCTTCGAGTCGACTTTCTACGGTCACTTTTCTGACAGGCATTACCCTTTTAGGTGTTACAATGAGGacctttgcttttgtttttgttttatatctttttaaaaCCCCTATGCACTTATTTTTATAGATGTCCTTTTGtagatttctttgttttttatttatagagaTTTACCAGTGAAAACTGCCTTAACGTGCCAGGAGAATAGTGTTTATGAACAAGGGCTGTACGTTACACAGCAATACATTTTGTACAATAACTATTTACCTCCATGTTAGATTTATTCTGCCTTATGGCATATTGAATGTATTGTGTAACCAATGTTTTCTAGATCTGTGATCTGTTTTATATTTGAGTACTATGCACTGTTACTTATTGTAGTATCAACAATGTTCTGAGACTGACTGGCGAGACCTATGCCCGTCTATGGTATTAAAGTTGTAGGACAGTTCACACTCTACAAGGATgccagtggaaaaaaaaaaacatgaatctgATTAAGACTGCCACAGGTGCAATTAGCCAGTTAAAGAGGTGGATGTGGCCACAGAAACGTCTAAAATCCACTGAATTCCTAATAAAGACATCCTACAGTTCATGTTTCAACATGCCATTACATTGTGTGTGATTGTCCAAGGTGTCCAATTGATGGGCTCTATGTTCTTGGGTCCAGTTTAATCATCAGTGAGTTCAACAAACTATTTTACCAAGCCCTGTGCACCTTTTTCTTATATACTGAGAAATTAGGAGTCAccataactgatcagttttagAACATATGTGCACTTGTGATAAAGTAAAGATGCATCCATGGTTCCATGAAGATGCATgtttgtgaaaaaatatttgttcttCAAAGATCCATATAAAGCACCTCAAGAGTGCAGTGAATATGTTTGACATTTTAGCACCGGCTGTCAAGAGTGTAATGCTAGTAGCCAATTCAAGAATCAACAAGAGTGTAATGCTAGTAGCCAATCCAAGATTCAACAAATGTGCAGTATTAAAATGTGTATGGCTCTTGGACTTTATAGTTCTGAATAGTCAGTATATTATAGAAGACTCTGGGTGCGTGCCAGCTGCATACTAATTACTAACACTAATGTAATATGTAGTATAGAGAAAAGCTTCAAAGTTGAGTATACTCCAGTATGGTCAGTTTTTTCAACAAACAATAGTATCCCACAATGGAATGCTGCTCTGTTATTAAAAGGCAGATAATGATGAAAGtacagtggcagcagcagcagaactttgaataacatacagtatgttagcATAGCGATGCTTCATCACTTCCTGTCAGTACAAAATGGgttaatactttaatattttgtgttctAACCTGTCAAACCTGCACTATTAAGATTAGTATGCCATACAGTCATTTGTAGTACGCAACTGGGACGCAGCCCCGCTCTTTGTCCCTTTATGACAGAAAATGTGTAAGCAATAAACtgagctgtccaatgaaaaacaggtaTTTCCATTTGTTTAGTGTATTACAAAATTTAAAGacacaaactgttccttacactgtgtcaaaatttcttcatcaataaggttttatctctcctgtaaatttgctgGGTTGGAGTTGCacgttttttattggacagcgacgctATTTAGTGAATGTGTTTTTGTAAAAGTTGTAAAAACATGCTGTAGAACTGTTCTCACGTGAGTATAAATAAAGCATCTGGGGTATCAACGCCTTATTATGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46010 False 1598 lncRNA 0.41 5 3853773 3860553
XR_455621.3 True 2822 lncRNA 0.41 5 3853445 3861449

Neighbor

gene id symbol gene type direction distance location
rnf40 rnf40,LOC108273672,LOC107565773,LOC107754088,LOC107743762,LOC107675023 coding upstream 1426 3839946 ~ 3852019 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding upstream 16864 3831384 ~ 3836581 (+)
nfe2l1 nfe2l1,nfe2l1b,LOC107565927,LOC107563780,LOC107743763,LOC107677875 coding upstream 32477 3813096 ~ 3820968 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding upstream 51907 3793875 ~ 3801538 (+)
pnpo pnpo coding upstream 71667 3777742 ~ 3781778 (+)
LOC103039553 znf668,LOC103039553,LOC108426467,LOC107754087,LOC107675019,LOC107743759 coding downstream 10048 3871497 ~ 3875993 (+)
LOC103039243 LOC103039243 coding downstream 16452 3877901 ~ 3879180 (+)
LOC103038417 NA coding downstream 33332 3894781 ~ 3897576 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding downstream 49122 3910571 ~ 3924231 (+)
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding downstream 97330 3958779 ~ 4003265 (+)
G34177 NA non-coding upstream 48868 3802979 ~ 3804577 (+)
G34105 NA non-coding upstream 295954 3545453 ~ 3557491 (+)
G34078 psmd11,LOC108426450,LOC107743775,LOC107568948,LOC103367354,LOC107691212,LOC101174707 non-coding upstream 462868 3382988 ~ 3390577 (+)
G34073 NA non-coding upstream 533523 3319714 ~ 3319922 (+)
G33987 NA non-coding upstream 635103 3217004 ~ 3218342 (+)
G34188 LOC108426464 non-coding downstream 2919 3864368 ~ 3868495 (+)
LOC111192351 NA non-coding downstream 142034 4003483 ~ 4008413 (+)
G34288 NA non-coding downstream 276306 4137755 ~ 4138153 (+)
G34345 NA non-coding downstream 722269 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 843464 4704913 ~ 4708973 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 194313 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 1796482 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2465426 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 2860927 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 2868064 983167 ~ 985381 (+)
G34309 NA other downstream 309602 4171051 ~ 4178083 (+)
LOC103025551 sema4g other downstream 1021107 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1831073 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2385197 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2640696 6502145 ~ 6541460 (+)

Expression


Co-expression Network