G34218 (rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773)


Basic Information

Item Value
gene id G34218
gene name rnf40,LOC108273672,LOC107743762,LOC107677883,LOC107563784,LOC107565773
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 3840003 ~ 3842727 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46051
tggttACCTGGTATTCCATCCTGTACTGGACCTTCAGGAGGCTTCACATCCACATCAGGCTGATTCTTCACTTGTTCCGGTTGCAACTCCGGCTGTGGTACCTGTtcgggctgctgctgctgttcctcctcctctgctggagctggaggctgAGGAAGTCCATCCTCTCCTTCCACCAGAGGGGCAGAAAATTCAGGGGCAGGTGAGGTGGCTGTTGCAGGAACAGTGGCAGGTGCAGAGGCTGGAGGACTAGCAGGAGTCTTCGCAGTCAGTGGAGTAACCTTAGGCTCAACACGTTGCAGTAATTCTTGAACATTTTCATCCAGCTGAGTCCAGTAGCGGTTAACAATCAGAAGTGTAGTATCATCAGTTGCTTGTCTTTTTTCCAGCTTCTCAATCTTCTCTCTCAGCTCATCTTCAATAGCTTGTCTTTGCTCAAGGCGTTCAAACAACTTCTTGTTCTTAAACTGAATGACCTTCATGTCCATTTCCTCAGTTGAGGAAACCCCTCCAATACGAATCGGCTCTATGAGGGTTGTTGtagttttctcttctttcttcatcttcttttctGGGGGGCCAGGAGGACTGTCCCCTCCTGAGGCACGCTTGCCCCCCGTGCCAGACATGGTTCCTTCGCTAGCCGTACTGGATAGGAACGGCAGTAGCAGT

Function

symbol description
rnf40 Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to act upstream of or within histone monoubiquitination. Predicted to be located in nucleus. Orthologous to human RNF40 (ring finger protein 40).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase BRE1B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46051 True 672 lncRNA 0.51 4 3840003 3842727

Neighbor

gene id symbol gene type direction distance location
ccdc189 NA coding downstream 446 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 10640 3823918 ~ 3829363 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 32985 3802912 ~ 3807018 (-)
mrpl10 NA coding downstream 63818 3770639 ~ 3776185 (-)
LOC103044690 osbpl7 coding downstream 69511 3749171 ~ 3770492 (-)
LOC103039858 LOC108426464 coding upstream 18847 3861574 ~ 3870176 (-)
LOC103038619 NA coding upstream 41287 3884014 ~ 3893365 (-)
LOC103036928 NA coding upstream 245376 4088103 ~ 4097955 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 305461 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 376740 4219467 ~ 4440792 (-)
G34166 pnpo non-coding downstream 58262 3777900 ~ 3781741 (-)
G34159 NA non-coding downstream 111043 3728642 ~ 3728960 (-)
G34101 NA non-coding downstream 440890 3391629 ~ 3399113 (-)
LOC111192350 NA non-coding downstream 650567 3107202 ~ 3189436 (-)
G34036 NA non-coding downstream 754597 3060369 ~ 3085406 (-)
LOC103038927 NA non-coding upstream 37855 3880582 ~ 3883412 (-)
G34230 NA non-coding upstream 60607 3903334 ~ 3903569 (-)
G34232 NA non-coding upstream 67562 3910289 ~ 3910512 (-)
G34238 NA non-coding upstream 81715 3924442 ~ 3924669 (-)
G34240 NA non-coding upstream 82754 3925481 ~ 3925690 (-)
prr15l prr15l other downstream 50811 3783125 ~ 3789192 (-)
G34046 NA other downstream 645626 3181168 ~ 3194377 (-)
G33904 NA other downstream 1530674 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1643908 2194757 ~ 2196095 (-)
G33823 srcap other downstream 1662944 2169023 ~ 2177059 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 1128971 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1412892 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 2060861 5903588 ~ 5928154 (-)
G34770 NA other upstream 2093108 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 2206274 6049001 ~ 6147311 (-)

Expression


Co-expression Network