G34265 (LOC108426470)


Basic Information

Item Value
gene id G34265
gene name LOC108426470
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4002924 ~ 4003802 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46115
taaataaataaacacaattttaaagaaaacgttcTGTTTCAGATATAGTAGGTTTCGTTCCAACAGCAACAATATGCCTTCCTCAACACTGGCCACAATCACtctgacaaaaacacacacacacacacacacacccacatccacacacacatacatacacacacactagaaGTACAGGTAGTAGGTCCAGTAGAGCAGGTTGATGAAGATGAAGGACAGGGGGAAGGTCAGACGGGAGTAGTTGTCGATGTAGTGCGGATTTTCCACATGGCAGCAGTTCAGGAAACACATGATGCGCCGTGCCACTGACAGGAACTTGGCGCAGCCGCTCTGGGGCTGGGAGGAGGTCTTCTCCTCTTTATTGTCACTGGGAGTTGGGCTGCTGGTGCTGCCGGCACGGGACAGCATCTCCTCCCTCCTGCGCGCCCGCAGAGCTGCAGCGCTGCCGATGGAGGTGACGATTCCGTTCATCTCATCCTCACG

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit pi-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46115 True 483 lncRNA 0.51 2 4002924 4003802

Neighbor

gene id symbol gene type direction distance location
LOC103038619 NA coding downstream 109559 3884014 ~ 3893365 (-)
LOC103039858 LOC108426464 coding downstream 132748 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 163367 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 173561 3823918 ~ 3829363 (-)
LOC103042441 LOC108426417,LOC107677865,LOC108273677 coding downstream 195906 3802912 ~ 3807018 (-)
LOC103036928 NA coding upstream 84301 4088103 ~ 4097955 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 144386 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 215665 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 588232 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 707298 4711100 ~ 4791734 (-)
G34240 NA non-coding downstream 77234 3925481 ~ 3925690 (-)
G34238 NA non-coding downstream 78255 3924442 ~ 3924669 (-)
G34232 NA non-coding downstream 92412 3910289 ~ 3910512 (-)
G34230 NA non-coding downstream 99355 3903334 ~ 3903569 (-)
LOC103038927 NA non-coding downstream 119512 3880582 ~ 3883412 (-)
G34298 bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954 non-coding upstream 108579 4112381 ~ 4124821 (-)
G34300 NA non-coding upstream 129484 4133286 ~ 4135287 (-)
G34311 NA non-coding upstream 167251 4171053 ~ 4177653 (-)
G34342 NA non-coding upstream 458075 4461877 ~ 4509252 (-)
G34381 NA non-coding upstream 582643 4586445 ~ 4586858 (-)
G34214 NA other downstream 119455 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 213732 3783125 ~ 3789192 (-)
G34046 NA other downstream 808547 3181168 ~ 3194377 (-)
G33904 NA other downstream 1693595 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1806829 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 967896 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1251817 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1899786 5903588 ~ 5928154 (-)
G34770 NA other upstream 1932033 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 2045199 6049001 ~ 6147311 (-)

Expression


Co-expression Network