G34298 (bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954)


Basic Information

Item Value
gene id G34298
gene name bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4112381 ~ 4124821 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46158
GGCTGCGATGCGAAAATTTGCCTGAGTCCCTGCAACAGTCTGAACCGCCAGGAAGCCTGTCCCCTGAGGTGTGATAGGCCCCCAGATAGAAGCACCACAGTGCATGTGTTCAGGAGTGTATTTAAGTAGGCGGTGGCGGCCATTATGGTCCTCAATATGGTAGAGCGGAATGGTCTGGAAACGTCTCCAGCCCAAAGACAGGATGAGCGGATCCCGGGTTTTTAGAATACGGTTAAACCAGCGATGTTTCTTCAATCGCATCTGCAGATAGCCAATATTGCCTTCACTGGCTCCCAAAGCACCGAGAATGATGGGATAGTGAGGGTCAAAGTTTGTGACAAATTCACACGGCAGGCCAGGAATCTCTAGACGCACATACATGCCAGGCCTGAACCCCTCGTACTGAATCCGAGCCTCATCATCCATGTCCTCAAACTCAGCCCTGTTCAGCTCAGCCTGTTTCTGCATCTCCTCCTTGAGATCATCAAAGTATGtagcatcagcatcatcataTTCTGCATCAAATCTCTCCTTCAGTCTCTTCTTCCTCTCCAGACGCTTGTTCTTTTTAGCTTCGTCATCATCAAATTTCACTACGACggcctcttcttcctccttttcttcatcttcatcatcatcatcctcCTCAGCTTCATCTCCCATCGCTTTGTGGACCTCTCCAGTTTCCAAGTCTTCAAAGTCTCCATAAACCTCATCATCCTCTTTAAGTAGAGTAGCAGCATCTTTGTCTCCCTCCCATTTCCCGGTGACAAAGCAGTCCCTTATAGAGGTCAGCATCTCCTCGTCTTCCCAGTCGTGCCCGGCGTCTGGATGGAAGCGTGAGCAGTCTACAGCATCTGCTCTGACTTTCTTATTCTTCTCAGGTCGGGTAACTCGGAACAGACCACCCAGCTCCTCATCCTCCTTGTTCTGTgcatcctcttcctcctccaccaCTGTGCCATACACCAGCTTGCGGAGGTTAGGGGCACTTCGCTGACGCTTCAGAAAGGCTTCTGTTGCCTTTTGGGCCAAATTTGACTTCCACTGTAGTGCTCCTACAGTATCAGCTCCCAGCTCTGCTTCCTCTTCCTCAAGCTCATCCTCAGCATCcattttctcctccttttcctctttttcttttttctttggcTTTAAAGCAggtgttttaatatttacttgCTGTTTCTTCTCTGATTCATCTTCTtcctcatcatcattatcatcatcatcatcatcatcatcgtcgtcgtcctcctcctcctcgtcatcctcatcatcatcatcatcatcatcatcatcttctcctgcactctccatctcttcttcatcctcttgATCAGATTCCTCTTCATCACTTTCTTCACTATTGtcgtcctcctcttcctcagtgAAGACAgctttcctcctctctctctgagtctctgGATCCCACACTCGACTCTCCACAGGGCCCTGCTTTACACTG
>TU46159
GGCTGCGATGCGAAAATTTGCCTGAGTCCCTGCAACAGTCTGAACCGCCAGGAAGCCTGTCCCCTGAGGTGTGATAGGCCCCCAGATAGAAGCACCACAGTGCATGTGTTCAGGAGTGTATTTAAGTAGGCGGTGGCGGCCATTATGGTCCTCAATATGGTAGAGCGGAATGGTCTGGAAACGTCTCCAGCCCAAAGACAGGATGAGCGGATCCCGGGTTTTTAGAATACGGTTAAACCAGCGATGTTTCTTCAATCGCATCTGCAGATAGCCAATATTGCCTTCACTGGCTCCCAAAGCACCGAGAATGATGGGATAGTGAGGGTCAAAGTTTGTGACAAATTCACACGGCAGGCCAGGAATCTCTAGACGCACATACATGCCAGGCCTGAACCCCTCGTACTGAATCCGAGCCTCATCATCCATGTCCTCAAACTCAGCCCTGTTCAGCTCAGCCTGTTTCTGCATCTCCTCCTTGAGATCATCAAAGTATGtagcatcagcatcatcataTTCTGCATCAAATCTCTCCTTCAGTCTCTTCTTCCTCTCCAGACGCTTGTTCTTTTTAGCTTCGTCATCATCAAATTTCACTACGACggcctcttcttcctccttttcttcatcttcatcatcatcatcctcCTCAGCTTCATCTCCCATCGCTTTGTGGACCTCTCCAGTTTCCAAGTCTTCAAAGTCTCCATAAACCTCATCATCCTCTTTAAGTAGAGTAGCAGCATCTTTGTCTCCCTCCCATTTCCCGGTGACAAAGCAGTCCCTTATAGAGGTCAGCATCTCCTCGTCTTCCCAGTCGTGCCCGGCGTCTGGATGGAAGCGTGAGCAGTCTACAGCATCTGCTCTGACTTTCTTATTCTTCTCAGGTCGGGTAACTCGGAACAGACCACCCAGCTCCTCATCCTCCTTGTTCTGTgcatcctcttcctcctccaccaCTGTGCCATACACCAGCTTGCGGAGGTTAGGGGCACTTCGCTGACGCTTCAGAAAGGCTTCTGTTGCCTTTTGGGCCAAATTTGACTTCCACTGTAGTGCTCCTACAGTATCAGCTCCCAGCTCTGCTTCCTCTTCCTCAAGCTCATCCTCAGCATCcattttctcctccttttcctctttttcttttttctttggcTTTAAAGCAggtgttttaatatttacttgCTGTTTCTTCTCTGATTCATCTTCTtcctcatcctcctcatcatcatcatcatcatcttctcctgcactctccatctcttcttcatcctcttgATCAGATTCCTCTTCATCACTTTCTTCACTATTGtcgtcctcctcttcctcagtgAAGACAgctttcctcctctctctctgagtctctgGATCCCACACTCGACTCTCCACAGGGCCCTGCTTTACACTGTTGTCCTGAACGTCATCTGGGGTCAGAGCGGCCGATCCTGTGAACAGCGAGACTTTGCTAGCAGCCATCTTTGCATctaatgtggtgtgtgtgccCATAAGTGACTGCACCAGTTCAGCAGTGGGTCGCACCTCCTCCTCCTGCTGCTTTACGTGGCTTCCAGGCATGTCAATGTACACTGCATCCTTATCATACACCAGTCCTCCAACCCCAGCCATGGGAGCGTACAGCAGTCTCTCCTTCTCATTTAGAGCTCTCTTCTTTAGTGTTTCAGGAAGTGGACAGGGGTCAGGAATAAAGCTGATGTCCTCTACAGAAAAGTCCCCTACACCTGGAATGTGAACCTGGCCCTTGTTCTTAAGGAATGTCCCACGCAGGTAGCCATAGAGAGACACAGTTCGGTCACATTTAGGATCTAACCGAATAGCCTCAGGATCAGTCAGGTCTTCCATTCGGTCAGCCACCACATAAGGGTGGGAGCTTTGCCAGAGAAGGGGTCTAAACTTCATGACTGAAATAAATCGTCCAAGGTTCTTCACTTCTCGCATCTGGTACTCCCCATACACCATTCCCGACAGGTAGAACAGCTTGGCCCCCTGGTAGACTTCAGTCCAGAAGCGATGTTTGAGACGTTTCTTAGTTTTATTGAGGGACTTGGTGTTTTTGAAGGTGTCCAAATGTGTAAGCACACCCATGATGCGAGGGAATCCATGGACCTGACAGATGTTGAGGAACTCGAACGTCTCCATTTCAAAGCCAAAGCTAGCATCTATCAGCATCAGAACCTGGTGAAGAGAAAGTAGGTTTCACGTGTTgcaaagaatctaaaaaaacattaatatacattattatattctGG
>TU46160
GGCTGCGATGCGAAAATTTGCCTGAGTCCCTGCAACAGTCTGAACCGCCAGGAAGCCTGTCCCCTGAGGTGTGATAGGCCCCCAGATAGAAGCACCACAGTGCATGTGTTCAGGAGTGTATTTAAGTAGGCGGTGGCGGCCATTATGGTCCTCAATATGGTAGAGCGGAATGGTCTGGAAACGTCTCCAGCCCAAAGACAGGATGAGCGGATCCCGGGTTTTTAGAATACGGTTAAACCAGCGATGTTTCTTCAATCGCATCTGCAGATAGCCAATATTGCCTTCACTGGCTCCCAAAGCACCGAGAATGATGGGATAGTGAGGGTCAAAGTTTGTGACAAATTCACACGGCAGGCCAGGAATCTCTAGACGCACATACATGCCAGGCCTGAACCCCTCGTACTGAATCCGAGCCTCATCATCCATGTCCTCAAACTCAGCCCTGTTCAGCTCAGCCTGTTTCTGCATCTCCTCCTTGAGATCATCAAAGTATGtagcatcagcatcatcataTTCTGCATCAAATCTCTCCTTCAGTCTCTTCTTCCTCTCCAGACGCTTGTTCTTTTTAGCTTCGTCATCATCAAATTTCACTACGACggcctcttcttcctccttttcttcatcttcatcatcatcatcctcCTCAGCTTCATCTCCCATCGCTTTGTGGACCTCTCCAGTTTCCAAGTCTTCAAAGTCTCCATAAACCTCATCATCCTCTTTAAGTAGAGTAGCAGCATCTTTGTCTCCCTCCCATTTCCCGGTGACAAAGCAGTCCCTTATAGAGGTCAGCATCTCCTCGTCTTCCCAGTCGTGCCCGGCGTCTGGATGGAAGCGTGAGCAGTCTACAGCATCTGCTCTGACTTTCTTATTCTTCTCAGGTCGGGTAACTCGGAACAGACCACCCAGCTCCTCATCCTCCTTGTTCTGTgcatcctcttcctcctccaccaCTGTGCCATACACCAGCTTGCGGAGGTTAGGGGCACTTCGCTGACGCTTCAGAAAGGCTTCTGTTGCCTTTTGGGCCAAATTTGACTTCCACTGTAGTGCTCCTACAGTATCAGCTCCCAGCTCTGCTTCCTCTTCCTCAAGCTCATCCTCAGCATCcattttctcctccttttcctctttttcttttttctttggcTTTAAAGCAggtgttttaatatttacttgCTGTTTCTTCTCTGATTCATCTTCTtcctcatcatcattatcatcatcatcatcatcatcatcgtcgtcgtcctcctcctcctcgtcatcctcatcatcatcatcatcatcatcatcatcttctcctgcactctccatctcttcttcatcctcttgATCAGATTCCTCTTCATCACTTTCTTCACTATTGtcgtcctcctcttcctcagtgAAGACAgctttcctcctctctctctgagtctctgGATCCCACACTCGACTCTCCACAGGGCCCTGCTTTACACTGTTGTCCTGAACGTCATCTGGGGTCAGAGCGGCCGATCCTGTGAACAGCGAGACTTTGCTAGCAGCCATCTTTGCATctaatgtggtgtgtgtgccCATAAGTGACTGCACCAGTTCAGCAGTGGGTCGCACCTCCTCCTGT

Function

symbol description
bms1 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Acts upstream of or within liver development; pancreas development; and rRNA processing. Located in nucleolus. Is expressed in gut; liver; pancreas; and retina. Human ortholog(s) of this gene implicated in nonsyndromic aplasia cutis congenita. Orthologous to human BMS1 (BMS1 ribosome biogenesis factor).

NR:

description
PREDICTED: ribosome biogenesis protein BMS1 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46158 False 1468 lncRNA 0.49 11 4117354 4124821
TU46159 True 2264 lncRNA 0.45 16 4112381 4124821
TU46160 False 1609 lncRNA 0.49 12 4114892 4124821

Neighbor

gene id symbol gene type direction distance location
LOC103036928 NA coding downstream 14426 4088103 ~ 4097955 (-)
LOC103038619 NA coding downstream 219016 3884014 ~ 3893365 (-)
LOC103039858 LOC108426464 coding downstream 242205 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 272824 3836623 ~ 3839557 (-)
cbx1 cbx1,cbx1b,LOC107677876 coding downstream 283018 3823918 ~ 3829363 (-)
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding upstream 23367 4148188 ~ 4161856 (-)
LOC103044368 LOC108426474 coding upstream 94646 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 467213 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 586279 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding upstream 636765 4761586 ~ 4763069 (-)
G34265 LOC108426470 non-coding downstream 108579 4002924 ~ 4003802 (-)
G34240 NA non-coding downstream 186691 3925481 ~ 3925690 (-)
G34238 NA non-coding downstream 187712 3924442 ~ 3924669 (-)
G34232 NA non-coding downstream 201869 3910289 ~ 3910512 (-)
G34230 NA non-coding downstream 208812 3903334 ~ 3903569 (-)
G34300 NA non-coding upstream 8465 4133286 ~ 4135287 (-)
G34311 NA non-coding upstream 46232 4171053 ~ 4177653 (-)
G34342 NA non-coding upstream 337056 4461877 ~ 4509252 (-)
G34381 NA non-coding upstream 461624 4586445 ~ 4586858 (-)
G34385 NA non-coding upstream 502861 4627682 ~ 4628175 (-)
G34214 NA other downstream 228912 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 323189 3783125 ~ 3789192 (-)
G34046 NA other downstream 918004 3181168 ~ 3194377 (-)
G33904 NA other downstream 1803052 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1916286 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 846877 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1130798 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1778767 5903588 ~ 5928154 (-)
G34770 NA other upstream 1811014 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1924180 6049001 ~ 6147311 (-)

Expression


Co-expression Network