G34309


Basic Information

Item Value
gene id G34309
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4171051 ~ 4178083 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46174
TACTGATTATtactgttaatcattcaatattcatcctgttaatcattcaatcagTATGTTATCATTGATTTTATGTGAACTGTGTATTCTCTGCTCCTGGGACATACAGGCTCAGATTTGAGGCCTAAAGAGATGAAAATTGAGTTCTGGCCTGGGAGACTAGCGGGTCATAGCAAATGGTGTTTTCTGATTCATGAATTATTCTCTCCTCAAGGAATGGAAAATTTAAGTTTGCCTGGAAACTGTCTTGTCAGAGTAAAAAAGAGTTTTCTGATTTGTGAattattctctcctaaaaagcttATCTTCTGTTGTACGTGCAGTTTTCTGTTCCTCTTTTTATATCTGGTAGGGACCTGTTCCAAACAGATCACGTGGACATTACCTCATGTATGAACGAGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTTgctttatttctgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTCGATTTCCACGACAGGTTGAAAAGCACTATGAGGGAAAGTTTGAGGGAAAGTCTCTCACAGGCTGTGAAGCAGCATCCAATCACGCAcggcatactctcaaccagaaatgactgtccacctggaggactccATCAGGCACTGAGGACAAAGTACCAATACATATCTG
>TU46176
TACTGATTATtactgttaatcattcaatattcatcctgttaatcattcaatcagTATGTTATCATTGATTTTATGTGAACTGTGTATTCTCTGCTCCTGGGACATACAGGCTCAGATTTGAGGCCTAAAGAGATGAAAATTGAGTTCTGGCCTGGGAGACTAGCGGGTCATAGCAAATGGTGTTTTCTGATTCATGAATTATTCTCTCCTCAAGGAATGGAAAATTTAAGTTTGCCTGGAAACTGTCTTGTCAGAGTAAAAAAGAGTTTTCTGATTTGTGAattattctctcctaaaaagcttATCTTCTGGTACGTGCAGTTTTCTGTTCCTCTTTTTATATCTGGTAGGGACCTGTTCCAAACAGATCACGTGGACATTACCTCATGTATGAACGAGGACTGTATAAAAATGCCCAGTCGACACAGAAAGGGGCTTTTTCCGACTTTCCTGACTACTCTCATTCTTCATCCATTGCTTTTgctttatttctgctttttgcaacttcaaaataaaaaccttctcTTTTTGGCATCCCGGCTCGTTGACTGTCTTTGTCGATTTCCACGACAGTATgttaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46174 True 727 lncRNA 0.40 2 4171051 4177806
TU46176 False 583 TUCP 0.43 3 4171051 4178083

Neighbor

gene id symbol gene type direction distance location
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 38080 4108457 ~ 4132971 (+)
LOC103043774 NA coding upstream 65298 4103372 ~ 4105753 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding upstream 100319 4039157 ~ 4070732 (+)
LOC103037557 gabrz,LOC108426470,LOC108273489,LOC107675029,LOC107754081,LOC107565977,LOC107677887,LOC107563789,LOC107743757 coding upstream 167786 3958779 ~ 4003265 (+)
LOC103038101 valopb,LOC103038101,LOC108426422,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788 coding upstream 246820 3910571 ~ 3924231 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding downstream 348862 4526945 ~ 4570849 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding downstream 621020 4799103 ~ 4819304 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding downstream 650955 4829038 ~ 4832548 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 753332 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 760916 4938999 ~ 4943449 (+)
G34288 NA non-coding upstream 32898 4137755 ~ 4138153 (+)
LOC111192351 NA non-coding upstream 162638 4003483 ~ 4008413 (+)
G34188 LOC108426464 non-coding upstream 302556 3864368 ~ 3868495 (+)
LOC103040174 NA non-coding upstream 309602 3853445 ~ 3861449 (+)
G34177 NA non-coding upstream 366474 3802979 ~ 3804577 (+)
G34345 NA non-coding downstream 405635 4583718 ~ 4583977 (+)
LOC111192352 NA non-coding downstream 526830 4704913 ~ 4708973 (+)
G34393 NA non-coding downstream 595803 4773886 ~ 4774852 (+)
G34394 NA non-coding downstream 596938 4775021 ~ 4775341 (+)
G34396 sfxn2 non-coding downstream 646260 4824343 ~ 4827906 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 511919 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2114088 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 2783032 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3178533 992312 ~ 992518 (+)
LOC103023950 LOC103023950,LOC108424882,LOC108273447,LOC103382057,LOC106536190 other upstream 3185670 983167 ~ 985381 (+)
LOC103025551 sema4g other downstream 704473 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 1514439 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 2068563 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 2324062 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 2414524 6592607 ~ 6663607 (+)

Expression


Co-expression Network