G34311


Basic Information

Item Value
gene id G34311
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4171053 ~ 4177653 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46182
TGTCGTGGAAATCGACAAAGACAGTCAACGAGCCGGGATGCCAAAAAgagaaggtttttattttgaagttgcaaaaagcagaaataaagcAAAAGCAATGGATGAAGAATGAGAGTAGTCAGGAAAGTCGGAAAAAGCCCCTTTCTGTGTCGACTGGGCATTTTTATACAGTCCTCGTTCATACATGAGGTAATGTCCACGTGATCTGTTTGGAACAGGTCCCTACCAGATATAAAAAGAGGAACAGAAAACTGCACGTACAACAGAAGATaagctttttaggagagaataatTCACAAATCAGAAAACTCTTTTTTACTCTGACAAGACAGTTTCCAGGCAAACTTAAATTTTCCATTCCTTGAGGAGAGAATAATTCATGAATCAGAAAACACCATTTGCTATGACCCGCTAGTCTCCCAGGCCAGAACTCAATTTTCATCTCTTTAGGCCTCAAATCTGAGCCTGTATGTCCCAGGAGCAGAGAATACACAGTTCACATAAAATCAATGATAACATActgattgaatgattaacaggatgaatattgaatgattaacagtaATAATCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46182 True 572 lncRNA 0.37 2 4171053 4177653

Neighbor

gene id symbol gene type direction distance location
LOC103021465 LOC108426423,LOC108273974,LOC107754115 coding downstream 9197 4148188 ~ 4161856 (-)
LOC103036928 NA coding downstream 73098 4088103 ~ 4097955 (-)
LOC103038619 NA coding downstream 277688 3884014 ~ 3893365 (-)
LOC103039858 LOC108426464 coding downstream 300877 3861574 ~ 3870176 (-)
ccdc189 NA coding downstream 331496 3836623 ~ 3839557 (-)
LOC103044368 LOC108426474 coding upstream 41814 4219467 ~ 4440792 (-)
atrnl1 atrnl1,atrnl1b,LOC107755548,LOC107689951,LOC107708169 coding upstream 414381 4592034 ~ 4703993 (-)
LOC103022618 cyth1,cyth1b,LOC103022618,LOC108274176,LOC108426518,LOC104925066,LOC107755486,LOC107690912,LOC107684080,LOC107581598 coding upstream 533447 4711100 ~ 4791734 (-)
LOC111192353 LOC106633734 coding upstream 583933 4761586 ~ 4763069 (-)
sfxn2 sfxn2,LOC107722238,LOC107581595,LOC107755483 coding upstream 642269 4819922 ~ 4847408 (-)
G34300 NA non-coding downstream 35766 4133286 ~ 4135287 (-)
G34298 bms1,LOC106605356,LOC107566656,LOC103354837,LOC108228954 non-coding downstream 46232 4112381 ~ 4124821 (-)
G34265 LOC108426470 non-coding downstream 167251 4002924 ~ 4003802 (-)
G34240 NA non-coding downstream 245363 3925481 ~ 3925690 (-)
G34238 NA non-coding downstream 246384 3924442 ~ 3924669 (-)
G34342 NA non-coding upstream 284224 4461877 ~ 4509252 (-)
G34381 NA non-coding upstream 408792 4586445 ~ 4586858 (-)
G34385 NA non-coding upstream 450029 4627682 ~ 4628175 (-)
G34429 NA non-coding upstream 596160 4773813 ~ 4774992 (-)
G34422 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802,LOC107690949 non-coding upstream 621458 4799111 ~ 4883208 (-)
G34214 NA other downstream 287584 3836621 ~ 3883469 (-)
prr15l prr15l other downstream 381861 3783125 ~ 3789192 (-)
G34046 NA other downstream 976676 3181168 ~ 3194377 (-)
G33904 NA other downstream 1861724 2303262 ~ 2309329 (-)
G33836 LOC103393566,LOC105888730 other downstream 1974958 2194757 ~ 2196095 (-)
psme4 psme4,psme4b,LOC108426507,LOC107584369,LOC107749369 other upstream 794045 4971698 ~ 4995913 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107566231,LOC106949585 other upstream 1077966 5255619 ~ 5362486 (-)
ccdc186 ccdc186,LOC107755417,LOC107689962 other upstream 1725935 5903588 ~ 5928154 (-)
G34770 NA other upstream 1758182 5935835 ~ 5939400 (-)
ablim1 ablim1 other upstream 1871348 6049001 ~ 6147311 (-)

Expression


Co-expression Network