G34396 (sfxn2)


Basic Information

Item Value
gene id G34396
gene name sfxn2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4824343 ~ 4827906 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46275
GGCCTTGTGTAGAGAAACTATGAAAAATGTAACTGTCTATGATAATAACAGAGAAAATGATGACAGTGCAGTACACACTTCTCCaattaacatgaaaaaaatgcaGCGTGCATTTTGTACAATTTCTGGGATTCTGCTGGCTCTGTGTTTACCTGCAGCTCTCTACTAAGGCTTTGGCTTCATCCAGTTTGGAGTCAGGCAGGAGGGCAGTGCGGCAGTCTGTAATGTTGAAGAAATGTTTGAGACGTCCCATGAAGGTGGACTGGTCCCAGCGCGGGGCGTCAATATTGAAGCCAGTCAGATCCGCCATGGTGTCTTCAGTCTCCCGACATGAGTTACCCCTCCTTACACCAGTGCAGGTCCCGAGCTTTAGCGGCTTCAGCAGCACAACAACGTGTTTCTAGCTGGCACCCGATGATGATGTGCTGAACTTCCCTCTGAACACGTGGCACCGTGTCCTCCAATCACAGCCGGGGGCAGATCCTCACACTAGGCGgcttgt

Function

symbol description
sfxn2 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN2 (sideroflexin 2).

NR:

description
sideroflexin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46275 True 502 lncRNA 0.50 2 4824343 4827906

Neighbor

gene id symbol gene type direction distance location
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 5039 4799103 ~ 4819304 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding upstream 253494 4526945 ~ 4570849 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 691372 4108457 ~ 4132971 (+)
LOC103043774 NA coding upstream 718590 4103372 ~ 4105753 (+)
LOC103037237 adgra1a,LOC108426471,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791 coding upstream 753611 4039157 ~ 4070732 (+)
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding downstream 1132 4829038 ~ 4832548 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 103509 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 111093 4938999 ~ 4943449 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding downstream 115964 4943870 ~ 4966430 (+)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 139668 4967574 ~ 4971335 (+)
G34394 NA non-coding upstream 49002 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 49491 4773886 ~ 4774852 (+)
LOC111192352 NA non-coding upstream 115370 4704913 ~ 4708973 (+)
G34345 NA non-coding upstream 240366 4583718 ~ 4583977 (+)
G34288 NA non-coding upstream 686190 4137755 ~ 4138153 (+)
G34410 mfsd13a non-coding downstream 42458 4870364 ~ 4871420 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding downstream 47232 4875138 ~ 4875554 (+)
G34485 NA non-coding downstream 143879 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 150841 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 226457 5054363 ~ 5056352 (+)
G34309 NA other upstream 646260 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1165211 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2767380 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3436324 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3831825 992312 ~ 992518 (+)
LOC103025551 sema4g other downstream 54650 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 864616 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1418740 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1674239 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1764701 6592607 ~ 6663607 (+)

Expression


Co-expression Network