G34410 (mfsd13a)


Basic Information

Item Value
gene id G34410
gene name mfsd13a
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4870364 ~ 4871420 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46290
ACCTATATCACTTTTCTTTTCAAAGCAAATCTGTTTGAAATATttggtataaaaatattttttatgagaGCAAATAAGCGACAAATTGTTAGAGTAAACATTTGCTAAAATTACAGTACCACAAAAATCACCAGCAACGAACTGACTGTTGCATTTTGATCATGATAACAAGCAACTCTCGACTCCTTTGCAAAAACCCATGCAGaaaaaagttggctCGGTAGGTAATGCACTGTTCGATCCAGAGGCTAAAATATATTTGGGTGTTGTACTGTACAAACAAAGTGCAGTCGAAGTGAATTTAGAGATGCTACTCTTCAATCTGGTCCCACAACATGTGATTGTTTTAACAGTTCATATTTGGTCCCATACAGTTTATAAATATAGACATGCAGACActttttcatataaaataaggCAGGTTTCActaaacactctctctctctcttaaagaGAGTCACAGTCACCATCCTCCATCACAGTCAGTGTGAGGCAGTAAAGAATGGGGTGGGCAGTATCAGATGGCCTTCACGTCAAGGAGATGACCATGGTGGGCACCCTGTCTCTGGGCTTTGATGCTCTGTAATCTGCGACTGTGGAGGGTGAAACGTGACCAGACCAGTAGCTGCAGCAGAGCACAGGTGATGGGCACAAACACCAGTAGGTAAAAGCAGCCCTGACGCAGCGGAACAGGGCTCTCAGCATCTGAGACAGCCACAGCTGCCACAGAATCCTTAATAGGGTCTCTTTGAAAGATGTCATAAcctggagagaaaaagaaaatgcgAGAGAACCGTGAACATAATTCTTCTTTCAGATTTtgttgaaaaataaatgttaaatataaccCCAAATCGGAATCCTATGGAAATCCTATATAAACCTTGGACGAAAAAATTACATTGACTTATTACATTGTAGACAGTTTGAATCCAAGATATTTC

Function

symbol description
mfsd13a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MFSD13A (major facilitator superfamily domain containing 13A).

NR:

description
PREDICTED: transmembrane protein 180

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46290 True 944 lncRNA 0.30 2 4870364 4871420

Neighbor

gene id symbol gene type direction distance location
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding upstream 37816 4829038 ~ 4832548 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 51060 4799103 ~ 4819304 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding upstream 299515 4526945 ~ 4570849 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 737393 4108457 ~ 4132971 (+)
LOC103043774 NA coding upstream 764611 4103372 ~ 4105753 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 59995 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 67579 4938999 ~ 4943449 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding downstream 72450 4943870 ~ 4966430 (+)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 96154 4967574 ~ 4971335 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding downstream 159387 5030807 ~ 5053505 (+)
G34396 sfxn2 non-coding upstream 42458 4824343 ~ 4827906 (+)
G34394 NA non-coding upstream 95023 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 95512 4773886 ~ 4774852 (+)
LOC111192352 NA non-coding upstream 161391 4704913 ~ 4708973 (+)
G34345 NA non-coding upstream 286387 4583718 ~ 4583977 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding downstream 3718 4875138 ~ 4875554 (+)
G34485 NA non-coding downstream 100365 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 107327 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 182943 5054363 ~ 5056352 (+)
G34532 NA non-coding downstream 236390 5107810 ~ 5125290 (+)
G34309 NA other upstream 692281 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1211232 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2813401 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3482345 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3877846 992312 ~ 992518 (+)
LOC103025551 sema4g other downstream 11136 4882556 ~ 4924766 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 821102 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1375226 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1630725 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1721187 6592607 ~ 6663607 (+)

Expression


Co-expression Network