LOC103025551 (sema4g)


Basic Information

Item Value
gene id LOC103025551
gene name sema4g
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 4882556 ~ 4924766 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU46296
TGGCATTCTGaggttcaataaaaaaaaattccatacTGTTAGTGTCCAAAGAGGTAAATTGGTTCTGTGTTGCTTGTTATATGACTGATGACAGGTGAGTGGGGGCATTAAGGCAAGTGAAGAAATTGAATTAACACACCTTTTACTTGTTTTGTGTCTCATTAGGTCTTATTTTGTAATACTTTTTTCATCTATTGGCAAGGCAAGTATTCCTAAGCATCCTTAAGAGCTTGACTATACCAAATACAATGTTTGATTGCATTGTACAAATACAATCACATGCCACATGTCAGTCCTGTCATGGAACAGGAACTTGTATGTGAAtgtgtatttaatgtgtattttatttctgaGCATGCTCAACAATCAAAACAATCACAGCACAGATAATCACTGCAATGTCCATTGTGGATGGTATTGTTTTCTGacataattatgtatttttgttacCTTTGTGACACTGAGACATGACAAATGAGTGTGCCGGTCAGCATTCAGCCTCATTTagaacttatacaggtgtgcacTCCCAAGCTGTTCTCTGAAGTAACATGTTATGATTAGTTTATACACTGctgtcccaagacttttggcatgtatgtgtgtatggccCACCACACCATTGTCATTGGACACATTTCACTGGACTATTTTCTGCAGGATCTTTTTTTAAGATGGACAGGAAGGCTGTAatattaaatactaataaaGTGATGTACTGTAGATAGTATTGCACAATATCACTCTTGTTCTGAACTGGTTATATTACTGGCAGTAAAACTGGCCTGCTGTAAATGTTGAGTCAGCGTTTGCACACCTGTCCCTAGTGGCTGCCTCCACTGGGCTGATTTTGTCACTGCAGAGCTGACAGTAACAGCAgtgctcattttttttactgtagcaGCTAGACTGGAGCTGAACGTATGACCCACTTGCTGAGCTGCTGAGTCAAgaaaatttactgtatttaattattcttgtattttattctttctcattttttattcttcatttCATGCCTATTATGGCTATTATGTCATGCCTATTATCTCGTCCCAGTTTacttgcaatgttttttttttaattctccaTTAAAAGATCATCTGTTTTCATAATTAgaatactataaaaatacaaaaatacccagACTCCCCTCTCTACACAGTGAGTTAAGCAGGTGTGCCTATTTCTTACACTGAAGTGATAGTGCTGCACACACAGCTCTTATAGTccccatagaaaaaaaaacatctccaaaagAACAGGGTGCTCTAAAGCATGAGGGGTATAAACTGAGTGATGGGGCACTTCCAAATACCTTTGGAAAAAGTTGAAATGGAATCTGTTGAAGTTGAATGGAAGTACCCAACATCATAACTCAACTTCACTAATGTTCATATAACtgcaaaaaaaggaagaaacactctctattaatataattgattttagaagaaacactgATTGAGGAAATGCCTGCCTGCTAATT
>XM_007259192.2
atgaatattcatgaagaGGCGTGTCCTCACCTGGGACAGTGGACCGCATGTGTGTTAGATCTCGGGCTGTTTCTGTGGGATTCAGTGGGACTAGCTTCACTAGCTTCACTAACGCGGTTCTTCACACTGCGCTGCTGCTTTCTGCTGAGTGGATGCAGGCGGTCAGACACTAGTACAACTTCTGACAGCAGCAGGATGAGCTTGCAGCCAGTAATTGCGTCCCTGGAAGGAAAATATTTGGTTCTGCACAGCAGAGTGGTGTAAACAACACACTTACTGTGGACAATCTACTCAAAGTGGCCTCAGAAGGATCTGGAAAGGCTCCAGCCGTATCAGCATTACTGTGGTCATGATGCATCCTAGACTGTCCACCTTCACACTAGCGGTTCTGTGCAGCCTGGCATCAGCACTGTGGGCTTTTCCATTTGGACCTGTACTAGAGCTGGATGTCACTCCAAGGACTACTGTTCCTGTCAGTGGGCTTCTGGGATGTAATCGTTTCCAGGGTTTGGCTGTGAACTACAGCACTCTGCTGCTGGAGGATGGAGCTGGGATGCTATATGTGGGAGCCAGGGAGGCCGTATATGCGCTGAATTTGTTTAATATCTCTGTTACACGGAACAACACATCTATGGATTGGGCTGCGTCTGCTGATCAGAAGAGACAGTGCTTAACTAAAGGAAGAGATAATCAGACTGAATGCTACAATTACATCCGGTTCCTCGACCGATATAATGAGACTCACCTCTACACCTGCGGGACTCACGCCTTCCGACCTCGCTGTGCCTACATCGATGCAGAGCGCTTCAGTTTTGTACGTTTTGAGGAAGGCCGGGAGAAGTGTCCCTATGATCCAGCCAAAGGATACACAGGCTTCATTGTGGATGGTGAAATGTATTCCGCCTCTCAGTATGAGTTCCGCAGCTCGCCTGACATTCGCCGCAACTTCCCCTTCCCCAACCTGAGGACAGAAGAAGCTCCAACAAGGTGGCTTCAAGAGGCGGACTTTGTTGGCTCAGCGTTATTGAGAGAGAGCATCAACAGCTCCATTGGGGACGATGACAAACTTTACTTCTTCttcacggagagaaacacggagcaGAGCCCATACTCCAGTCAGACCAGAGTGTCTAGAGTGGCCAGGGTATGCAAGGGGGATATCGGCGGGCAGAGGACTCTCCAGAGGAAGTGGACCTCCTTTTTGAAGGCTCGGCTTGTGTGCTCCATTCCCGAATATGAGCTGCAGTTTAACATCCTGCGCAGTGTGTTTATACAGGAAGGACCTACTGTACACGACAGCACCTTCTGGGGGGTGTTTGGGCTTGAATGGAAAAATGTTAAAGCATCTGCAGTCTGCCAGTACTCACTCAAAGACGTGCAGGCTGTGTTTGATGGGCCCTACATGGAACTCCAAGACTCTAAATGGAGGGAATATAGTGGGAAAGTACCAGACCTTAGACCCGGCTCTTGCATAACTGATCAGCACCGCGCTCAGCTCATAAATACGTCCCGTGACCTTCCTGACAGCGTACTAATGTTTGCTCGGAGACACCCCTTGATGGCCAAACAAATCCAGCCAATAGGAGGGAGACCTCTACTGTTCAAAAAGAGTGTGGACTACACCAGGATAGCTGTTCTCAAAGTCTCAGCTGTGGATGGGAGAAGCTACAGAATGCTCTTCATGGGAACAGATGATGGGTGGCTGCATAAAGCTGTAGAGATTGGAGATCGAGTGCACATCATCGAGGAGCTTCAGCTGTTTGAAGGGTCGCAACGCATCAACAACATGGTTATTTCACGTAAACAGGGGAGTGTATACGTCAGTGCTGCCTCTGGAGTGGTACAGGTGCCCCTGTCTGCCTGTGCTCGCTACACCTCATGTTACGACTGTGTGTTTGCCCGGGACCCACTGTGTGGCTGGGATGGAAGACAGTGTGTTGAAATATCATCCTACCCTGATAAATCTAACATAACTCAGGATGTTCAGATGGGTAACCGTGGGTGTGATGATATGACAGCTGATGGTTTGGTGTCTCATCGCACTCGCTCAGTGATGGCAGGGGACGATGTGCTCTTACAGTGTGAGCTGCACTCCAACCTGGCTGCCCCGCGTTGGACACTGAATGGTGAGCAGCTGCAGGGTTATGGCACTGAAGCAGGTTACCGTACGGGCACCGACGGACTGCTCATCATCGGGGCTCAGAGCAGGCAGAGTGGTCATTACCGCTGTTATGCTGTGGAGAATGGCGTTTGGGTTCCTGTACGCAGCTACATGGTAAGGGTGCAGCCTGTAGTGGCGGCTTCACCTCGTCTACCGTCTGATCCAACAGCCCTACCGGAAAGTTTCTTCACCACTACGAGCATGCTGCCCGTCACGCCCACTAGTGTTCCCACTGAGCAGCCCCTGCACTCTCCACCTGCTGCCCTGCCTTCTGGCCCAGAGTTTCAAACCAATCGCCATATGGAGGCCATGTACATCTCTCTGGTGGCTGTTTTAGGTGGACTATGCCTTGTGCTAACTGTGGTTCTACTGTATGTAAGCTTCTGCGCACACAGTGACCAGGCCGGCAGGAAGTATTCTCAGCACGGGCTGTCGCTTCCTGCAGTCACTGAGAGAAAGCGGAGCTCCCATTTGGAGCTGAAGACCATCTCCAGCCACTGCAATGGACGAGCCGACATGCGCGGAAGAGCAGCATCAACAGACGGGGTGTTCCTGCAGATAGTTCCAGGGGAAGGCCATGCCAGCCCCAGCAGTGAGCCACCTCCAGCACCTCCGCTGCCCATGCCACCACCCCTGCCATCCACAGACTTCACGAACGGCCTCTCAGCCACGCTCCCCAGCGTCTTAAGAAAGATGAATGGGAACAGTTATGTTCTCCTGGGGCAGGGGGACTCAGAGATGACCTCACCGCTCTACCATTCCTTCACAGAAGAGCTCAACAGAATCTTAGAGAAgaggaaacacacacagttcGATGTAGAGCCAGACGAGAGCTCAGTGTAGCACCCTTTCTCCCCTGTTTCTCCATGTAGCAGCCCCTTCATGTTGGGAAGCTGTGTGTCAAAATAATATACCCGTGGTGATCGTGCCAGTTTTGCACTCTATCCTCATGTACACCTCCAGTATATCTAAATAGAAGCTGTTGTGTATCATGATCAGGTTTTTTGTAATATCGTGGACCTTGTGGAACCTAATGACATTCATTAGTATTGTGAAAAAACCCACTTGTTTATCTTCAGAGGTCAGAGACTAGCCTCGGATGGAGATCAAGTTCTGTAAGGATGGTTGAAAATAACAGACTGGTTCCCAGAACACGACGAACTTGCTGAAACAAAACTGGACATGTGACCTGAATGCCCGCAGTGTTAAAGTCCAGAGTTTTAGACCCAAATgttcttatttatattaacaatgTTTTGCATTCAGACATAGAGAAAGCAAAAAGCAATGCAAATTCATTATATAATCAACATggtgtttatagaaaaaaatgcagatttttcttttttttgtcacataGCACTGTATGTATATAACACATATGTTGCAGTTTTCATTTCCTGTACTGACTTACAATCACAAGTGATATAAATAATATCTGACACATATTTTTGGCCTTTGTCAGAAGGGATTTGTGAACAGTTTGCAAAAGtaacattaaataatagtttacaTCATATCTTGGGATAATCtgtgagaatatatatatatatatatatatatatatatataatttagggATTATGACCAGACCTGAGACAAGAAAACAGATCTTGGGTACACCAAATGAACCAAAAAATGGCATTCTGaggttcaataaaaaaaaattccatacTGTTAGTGTCCAAAGAGGTAAATTGGTTCTGTGTTGCTTGTTATATGACTGATGACAGGTGAGTGGGGGCATTAAGGCAAGTGAAGAAATTGAATTAACACACCTTTTACTTGTTTTGTGTCTCATTAGGTCTTATTTTGTAATACTTTTTTCATCTATTGGCAAGGCAAGTATTCCTAAGCATCCTTAAGAGCTTGACTATACCAAATACAATGTTTGATTGCATTGTACAAATACAATCACATGCCACATGTCAGTCCTGTCATGGAACAGGAACTTGTATGTGAAtgtgtatttaatgtgtattttatttctgaGCATGCTCAACAATCAAAACAATCACAGCACAGATAATCACTGCAATGTCCATTGTGGATGGTATTGTTTTCTGacataattatgtatttttgttacCTTTGTGACACTGAGACATGACAAATGAGTGTGCCGGTCAGCATTCAGCCTCATTTagaacttatacaggtgtgcacTCCCAAGCTGTTCTCTGAAGTAACATGTTATGATTAGTTTATACACTGctgtcccaagacttttggcatgtatgtgtgtatggccCACCACACCATTGTCATTGGACACATTTCACTGGACTATTTTCTGCAGGATCTTTTTTTAAGATGGACAGGAAGGCTGTAatattaaatactaataaaGTGATGTACTGTAGATAGTATTGCACAATATCACTCTTGTTCTGAACTGGTTATATTACTGGCAGTAAAACTGGCCTGCTGTAAATGTTGAGTCAGCGTTTGCACACCTGTCCCTAGTGGCTGCCTCCACTGGGCTGATTTTGTCACTGCAGAGCTGACAGTAACAGCAgtgctcattttttttactgtagcaGCTAGACTGGAGCTGAACGTATGACCCACTTGCTGAGCTGCTGAGTCAAgaaaatttactgtatttaattattcttgtattttattctttctcattttttattcttcatttCATGCCTATTATGGCTATTATGTCATGCCTATTATCTCGTCCCAGTTTacttgcaatgttttttttttaattctccaTTAAAAGATCATCTGTTTTCATAATTAgaatactataaaaatacaaaaatacccagACTCCCCTCTCTACACAGTGAGTTAAGCAGGTGTGCCTATTTCTTACACTGAAGTGATAGTGCTGCACACACAGCTCTTATAGTccccatagaaaaaaaaacatctccaaaagAACAGGGTGCTCTAAAGCATGAGGGGTATAAACTGAGTGATGGGGCACTTCCAAATACCTTTGGAAAAAGTTGAAATGGAATCTGTTGAAGTTGAATGGAAGTACCCAACATCATAACTCAACTTCACTAATGTTCATATAACt

Function

symbol description
sema4g Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: semaphorin-4G

GO: NA

KEGG:

id description
K06521 SEMA4, CD100; semaphorin 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU46296 False 1486 lncRNA 0.36 1 4923281 4924766
XM_007259192.2 True 5204 mRNA 0.46 15 4882556 4924684

Neighbor

gene id symbol gene type direction distance location
LOC103024595 arl3,LOC102778022,LOC103367836,LOC107684078,LOC103145158,LOC102201386 coding upstream 50008 4829038 ~ 4832548 (+)
LOC103024286 timp2,timp2a,LOC103024286,LOC108274067,LOC107755484,LOC107684079,LOC107565802 coding upstream 63252 4799103 ~ 4819304 (+)
LOC103022011 gfra1,gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107707958 coding upstream 311707 4526945 ~ 4570849 (+)
bms1 bms1,LOC107689949,LOC107675025,LOC107566656 coding upstream 749585 4108457 ~ 4132971 (+)
LOC103043774 NA coding upstream 776803 4103372 ~ 4105753 (+)
twnk cunh10orf2,peo1,LOC107755431,LOC107690904,LOC107565785 coding downstream 6649 4931415 ~ 4937026 (+)
galk1 galk1 coding downstream 14233 4938999 ~ 4943449 (+)
llgl2 llgl2,LOC107690902,LOC107684069,LOC107755492,LOC107722216 coding downstream 19104 4943870 ~ 4966430 (+)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 42808 4967574 ~ 4971335 (+)
thbs2 thbs2b,LOC108426506,LOC108274281,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836 coding downstream 106041 5030807 ~ 5053505 (+)
G34409 mfsd13a,LOC107755491,LOC107565800,LOC107690908 non-coding upstream 7002 4875138 ~ 4875554 (+)
G34410 mfsd13a non-coding upstream 11136 4870364 ~ 4871420 (+)
G34396 sfxn2 non-coding upstream 54650 4824343 ~ 4827906 (+)
G34394 NA non-coding upstream 107215 4775021 ~ 4775341 (+)
G34393 NA non-coding upstream 107704 4773886 ~ 4774852 (+)
G34485 NA non-coding downstream 47019 4971785 ~ 4973087 (+)
G34489 NA non-coding downstream 53981 4978747 ~ 4979412 (+)
G34500 NA non-coding downstream 129597 5054363 ~ 5056352 (+)
G34532 NA non-coding downstream 183044 5107810 ~ 5125290 (+)
G34534 NA non-coding downstream 210633 5135399 ~ 5135654 (+)
G34309 NA other upstream 704473 4171051 ~ 4178083 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 other upstream 1223424 3564030 ~ 3659132 (+)
amz2 amz2 other upstream 2825593 2050742 ~ 2056963 (+)
LOC111192342 dnah9 other upstream 3494537 1369173 ~ 1388019 (+)
trnal-aag NA other upstream 3890038 992312 ~ 992518 (+)
dnmbp dnmbp,LOC107722208,LOC107684043 other downstream 767756 5692522 ~ 5756116 (+)
LOC103045604 LOC108426437,LOC107683136 other downstream 1321880 6246646 ~ 6258050 (+)
slc38a10 slc38a10,LOC102792191,LOC107749860 other downstream 1577379 6502145 ~ 6541460 (+)
LOC103029551 qki2,LOC103029551,LOC108426533,LOC107684089,LOC108274051,LOC107749853,LOC107755469 other downstream 1667841 6592607 ~ 6663607 (+)
G34931 NA other downstream 1806188 6730954 ~ 6731424 (+)

Expression


Co-expression Network